ENSGALG00000016481


Gallus gallus

Features
Gene ID: ENSGALG00000016481
  
Biological name :PUM2
  
Synonyms : PUM2 / pumilio homolog 2
  
Possible biological names infered from orthology : pumilio RNA binding family member 2 / Q80U58 / Q8TB72
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 102037520
Gene end: 102097797
  
Corresponding Affymetrix probe sets: Gga.1780.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000048514
Ensembl peptide - ENSGALP00000064820
Ensembl peptide - ENSGALP00000048835
Ensembl peptide - ENSGALP00000026539
NCBI entrez gene - 421961     See in Manteia.
RefSeq - XM_015284971
RefSeq - XM_015284965
RefSeq - XM_015284966
RefSeq - XM_015284967
RefSeq - XM_015284969
RefSeq - XM_015284970
RefSeq - NM_001039292
RefSeq - XM_015284959
RefSeq - XM_015284960
RefSeq - XM_015284961
RefSeq - XM_015284963
RefSeq - XM_015284964
RefSeq Peptide - NP_001034381
swissprot - A0A1L1S134
swissprot - A0A1D5P7Z0
swissprot - F1NV23
swissprot - A0A1D5P731
Ensembl - ENSGALG00000016481
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pum2ENSDARG00000061040Danio rerio
 PUM2ENSG00000055917Homo sapiens
 Pum2ENSMUSG00000020594Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PUM1 / Q2VB19 / Pumilio homolog 1 / Q80U78* / Q14671* / pumilio RNA binding family member 1*ENSGALG0000004259878


Protein motifs (from Interpro)
Interpro ID Name
 IPR001313  Pumilio RNA-binding repeat
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR033133  Pumilio homology domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010608 posttranscriptional regulation of gene expression IEA
 biological_processGO:0034063 stress granule assembly IEA
 biological_processGO:0035196 production of miRNAs involved in gene silencing by miRNA IEA
 biological_processGO:0043488 regulation of mRNA stability IEA
 biological_processGO:0051983 regulation of chromosome segregation IEA
 biological_processGO:1900246 positive regulation of RIG-I signaling pathway IEA
 biological_processGO:2000637 positive regulation of gene silencing by miRNA IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010494 cytoplasmic stress granule IEA
 cellular_componentGO:0031965 nuclear membrane IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA
 molecular_functionGO:0035198 miRNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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