ENSDARG00000099972


Danio rerio

Features
Gene ID: ENSDARG00000099972
  
Biological name :nup153
  
Synonyms : nucleoporin 153 / nup153
  
Possible biological names infered from orthology : P49790
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 46019313
Gene end: 46058963
  
Corresponding Affymetrix probe sets: Dr.7253.1.S1_at (Zebrafish Array)   XM_695225_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000131525
Ensembl peptide - ENSDARP00000141671
Ensembl peptide - ENSDARP00000132131
NCBI entrez gene - 571621     See in Manteia.
RefSeq - XM_009294458
RefSeq - XM_695225
RefSeq - NM_001326384
RefSeq Peptide - NP_001313313
swissprot - A0A0R4IVZ0
swissprot - A0A0R4IEI9
swissprot - A0A0R4IDM8
ZFIN ID - ZDB-GENE-030131-4581
Ensembl - ENSDARG00000099972
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NUP153ENSGALG00000012720Gallus gallus
 NUP153ENSG00000124789Homo sapiens
 Nup153ENSMUSG00000021374Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001876  Zinc finger, RanBP2-type
 IPR013913  Nucleoporin Nup153, N-terminal
 IPR026054  Nuclear pore complex protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IMP
 biological_processGO:0006913 nucleocytoplasmic transport IEA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0017056 structural constituent of nuclear pore IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
Regulation of Glucokinase by Glucokinase Regulatory Protein
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001285 intersegmental vessel intersegmental vessel malformed , abnormal
intersegmental vessel angiogenesis decreased process quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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