ENSDARG00000100548


Danio rerio

Features
Gene ID: ENSDARG00000100548
  
Biological name :tefm
  
Synonyms : Q0P4D6 / tefm / transcription elongation factor, mitochondrial
  
Possible biological names infered from orthology : Q5SSK3 / Q96QE5
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 18554819
Gene end: 18560200
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000141794
NCBI entrez gene - 566236     See in Manteia.
RefSeq - NM_001080026
RefSeq Peptide - NP_001073495
swissprot - Q0P4D6
ZFIN ID - ZDB-GENE-060825-345
Ensembl - ENSDARG00000100548
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TEFMENSG00000172171Homo sapiens
 TefmENSMUSG00000046909Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR010994  RuvA domain 2-like
 IPR012337  Ribonuclease H-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006119 oxidative phosphorylation ISS
 biological_processGO:0006259 DNA metabolic process IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006390 mitochondrial transcription ISS
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix ISS
 cellular_componentGO:0042645 mitochondrial nucleoid ISS
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0030337 DNA polymerase processivity factor activity ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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