ENSDARG00000101062


Danio rerio

Features
Gene ID: ENSDARG00000101062
  
Biological name :fdft1
  
Synonyms : farnesyl-diphosphate farnesyltransferase 1 / fdft1
  
Possible biological names infered from orthology : P37268 / P53798 / Squalene synthase
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 52907397
Gene end: 52939501
  
Corresponding Affymetrix probe sets: Dr.11369.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000133463
Ensembl peptide - ENSDARP00000141194
NCBI entrez gene - 571911     See in Manteia.
swissprot - A0A0R4IIV0
swissprot - A0A0R4IVV5
ZFIN ID - ZDB-GENE-081104-242
Ensembl - ENSDARG00000101062
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FDFT1ENSGALG00000016665Gallus gallus
 FDFT1ENSG00000079459Homo sapiens
 Fdft1ENSMUSG00000021273Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002060  Squalene/phytoene synthase
 IPR006449  Squalene synthase-like
 IPR008949  Isoprenoid synthase domain superfamily
 IPR019845  Squalene/phytoene synthase, conserved site
 IPR033904  Trans-Isoprenyl Diphosphate Synthases, head-to-head


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006696 ergosterol biosynthetic process IEA
 biological_processGO:0008610 lipid biosynthetic process IEA
 biological_processGO:0009058 biosynthetic process IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004310 farnesyl-diphosphate farnesyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEA
 molecular_functionGO:0051996 squalene synthase activity IEA


Pathways (from Reactome)
Pathway description
Cholesterol biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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