ENSGALG00000016665


Gallus gallus

Features
Gene ID: ENSGALG00000016665
  
Biological name :FDFT1
  
Synonyms : FDFT1 / squalene synthase
  
Possible biological names infered from orthology : farnesyl-diphosphate farnesyltransferase 1 / P37268 / P53798
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 107816740
Gene end: 107827820
  
Corresponding Affymetrix probe sets: Gga.8817.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000026843
NCBI entrez gene - 422038     See in Manteia.
RefSeq - NM_001039294
RefSeq Peptide - NP_001034383
swissprot - F1NFJ9
Ensembl - ENSGALG00000016665
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 fdft1ENSDARG00000101062Danio rerio
 FDFT1ENSG00000079459Homo sapiens
 Fdft1ENSMUSG00000021273Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002060  Squalene/phytoene synthase
 IPR006449  Squalene synthase-like
 IPR008949  Isoprenoid synthase domain superfamily
 IPR019845  Squalene/phytoene synthase, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006695 cholesterol biosynthetic process IBA
 biological_processGO:0006696 ergosterol biosynthetic process IEA
 biological_processGO:0008610 lipid biosynthetic process IEA
 biological_processGO:0009058 biosynthetic process IEA
 biological_processGO:0045338 farnesyl diphosphate metabolic process IBA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IBA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004310 farnesyl-diphosphate farnesyltransferase activity IBA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEA
 molecular_functionGO:0051996 squalene synthase activity IBA


Pathways (from Reactome)
Pathway description
Cholesterol biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr