ENSDARG00000101199


Danio rerio

Features
Gene ID: ENSDARG00000101199
  
Biological name :rbp4
  
Synonyms : rbp4 / retinol binding protein 4, plasma
  
Possible biological names infered from orthology : P02753 / Q00724 / retinol binding protein 4
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 5115929
Gene end: 5120339
  
Corresponding Affymetrix probe sets: Dr.5479.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000140124
Ensembl peptide - ENSDARP00000141692
NCBI entrez gene - 30077     See in Manteia.
swissprot - A0A0R4IVC3
swissprot - Q9PT95
ZFIN ID - ZDB-GENE-000210-19
Ensembl - ENSDARG00000101199
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBP4AENSGALG00000006629Gallus gallus
 RBP4ENSG00000138207Homo sapiens
 Rbp4ENSMUSG00000024990Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbp4l / retinol binding protein 4, likeENSDARG0000004468446


Protein motifs (from Interpro)
Interpro ID Name
 IPR000566  Lipocalin/cytosolic fatty-acid binding domain
 IPR002345  Lipocalin
 IPR002449  Retinol binding protein/Purpurin
 IPR012674  Calycin
 IPR022271  Lipocalin, ApoD type
 IPR022272  Lipocalin family conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001889 liver development IMP
 biological_processGO:0032526 response to retinoic acid IDA
 biological_processGO:0034633 retinol transport IEA
 molecular_functionGO:0005501 retinoid binding IEA
 molecular_functionGO:0034632 retinol transmembrane transporter activity IEA


Pathways (from Reactome)
Pathway description
The canonical retinoid cycle in rods (twilight vision)
Retinoid metabolism and transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain morphology , abnormal
Show

 ZFA:0000084 yolk yolk low brightness , abnormal
yolk increased size , abnormal
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 ZFA:0000106 extension extension decreased length , abnormal
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 ZFA:0000124 liver primordium liver primordium duplicated , abnormal
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 ZFA:0001094 whole organism whole organism lethal (sensu genetics) , abnormal
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 ZFA:0001117 post-vent region post-vent region morphology , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000037191 ttr / transthyretin (prealbumin, amyloidosis type I) / P02766* / P07309* / transthyretin*  / reaction / complex
 ENSDARG00000051874 stra6 / F1RAX4 / stimulated by retinoic acid 6 / Q9BX79* / stimulated by retinoic acid gene 6*  / complex / reaction






 

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