ENSDARG00000037191


Danio rerio

Features
Gene ID: ENSDARG00000037191
  
Biological name :ttr
  
Synonyms : transthyretin (prealbumin, amyloidosis type I) / ttr
  
Possible biological names infered from orthology : P02766 / P07309 / transthyretin
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 6142433
Gene end: 6157942
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000054083
Ensembl peptide - ENSDARP00000115741
NCBI entrez gene - 449556     See in Manteia.
RefSeq - NM_001005598
RefSeq Peptide - NP_001005598
swissprot - B8JLL8
swissprot - B8JLL7
ZFIN ID - ZDB-GENE-040927-14
Ensembl - ENSDARG00000037191
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000044733Gallus gallus
 TTRENSGALG00000015143Gallus gallus
 TTRENSG00000118271Homo sapiens
 TtrENSMUSG00000061808Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
uraha / Q06S87 / urate (5-hydroxyiso-) hydrolase a / Urah* / Q9CRB3* / urate (5-hydroxyiso-) hydrolase*ENSDARG0000010071927
urahb / urate (5-hydroxyiso-) hydrolase bENSDARG0000008933123


Protein motifs (from Interpro)
Interpro ID Name
 IPR000895  Transthyretin/hydroxyisourate hydrolase
 IPR023416  Transthyretin/hydroxyisourate hydrolase domain
 IPR030178  Transthyretin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0042572 retinol metabolic process IEA
 biological_processGO:0070327 thyroid hormone transport IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IBA
 molecular_functionGO:0070324 thyroid hormone binding IEA


Pathways (from Reactome)
Pathway description
The canonical retinoid cycle in rods (twilight vision)
Non-integrin membrane-ECM interactions
Neutrophil degranulation
Retinoid metabolism and transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000051874 stra6 / F1RAX4 / stimulated by retinoic acid 6 / Q9BX79* / stimulated by retinoic acid gene 6*  / complex / reaction
 ENSDARG00000037191 ttr / transthyretin (prealbumin, amyloidosis type I) / P02766* / P07309* / transthyretin*  / complex
 ENSDARG00000101199 rbp4 / retinol binding protein 4, plasma / P02753* / Q00724* / retinol binding protein 4*  / reaction / complex






 

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