ENSG00000138207


Homo sapiens

Features
Gene ID: ENSG00000138207
  
Biological name :RBP4
  
Synonyms : P02753 / RBP4 / retinol binding protein 4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: -1
Band: q23.33
Gene start: 93591687
Gene end: 93601744
  
Corresponding Affymetrix probe sets: 219140_s_at (Human Genome U133 Plus 2.0 Array)   222049_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000360519
Ensembl peptide - ENSP00000360522
Ensembl peptide - ENSP00000360524
Ensembl peptide - ENSP00000487033
NCBI entrez gene - 5950     See in Manteia.
OMIM - 180250
RefSeq - NM_001323518
RefSeq - NM_001323517
RefSeq - NM_006744
RefSeq Peptide - NP_001310446
RefSeq Peptide - NP_001310447
RefSeq Peptide - NP_006735
swissprot - P02753
swissprot - Q5VY30
Ensembl - ENSG00000138207
  
Related genetic diseases (OMIM): 615147 - Retinal dystrophy, iris coloboma, and comedogenic acne syndrome, 615147
  616428 - Microphthalmia, isolated, with coloboma 10, 616428
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbp4ENSDARG00000101199Danio rerio
 RBP4AENSGALG00000006629Gallus gallus
 Rbp4ENSMUSG00000024990Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000566  Lipocalin/cytosolic fatty-acid binding domain
 IPR002345  Lipocalin
 IPR002449  Retinol binding protein/Purpurin
 IPR012674  Calycin
 IPR022271  Lipocalin, ApoD type
 IPR022272  Lipocalin family conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001523 retinoid metabolic process TAS
 biological_processGO:0001654 eye development ISS
 biological_processGO:0006094 gluconeogenesis ISS
 biological_processGO:0007507 heart development ISS
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0030277 maintenance of gastrointestinal epithelium IDA
 biological_processGO:0030324 lung development ISS
 biological_processGO:0032024 positive regulation of insulin secretion IMP
 biological_processGO:0032526 response to retinoic acid IDA
 biological_processGO:0034633 retinol transport IEA
 biological_processGO:0042572 retinol metabolic process IMP
 biological_processGO:0042593 glucose homeostasis IDA
 biological_processGO:0045471 response to ethanol IEA
 biological_processGO:0048562 embryonic organ morphogenesis ISS
 biological_processGO:0048706 embryonic skeletal system development ISS
 biological_processGO:0048738 cardiac muscle tissue development ISS
 biological_processGO:0048807 female genitalia morphogenesis ISS
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0051024 positive regulation of immunoglobulin secretion ISS
 biological_processGO:0060044 negative regulation of cardiac muscle cell proliferation ISS
 biological_processGO:0060059 embryonic retina morphogenesis in camera-type eye ISS
 biological_processGO:0060065 uterus development ISS
 biological_processGO:0060068 vagina development ISS
 biological_processGO:0060157 urinary bladder development ISS
 biological_processGO:0060347 heart trabecula formation ISS
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005501 retinoid binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016918 retinal binding IEA
 molecular_functionGO:0019841 retinol binding IDA
 molecular_functionGO:0034632 retinol transmembrane transporter activity IEA
 molecular_functionGO:0036094 small molecule binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
Retinoid cycle disease events
The canonical retinoid cycle in rods (twilight vision)
Retinoid metabolism disease events
Retinoid metabolism and transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
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 HP:0000505 Impaired vision 
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 HP:0000556 Retinal dystrophy 
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 HP:0000567 Chorioretinal coloboma 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0007663 Decreased central vision 
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 HP:0025492 Microcoria "A small pupil (typically diameter less than 2 mm) that dilates poorly or not at all in response to topically administered mydriatic drugs." [PMID:25772937]
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 HP:0030825 Absent foveal reflex "Lack of the foveal reflex, which normally occurs as a result of the reflection of light from the ophthalmoscope in the foveal pit upon examination. The foveal reflex is a bright pinpoint of light that is observed to move sideways or up and down in response to movement of the opthalmoscope." [HPO:probinson, PMID:27491360]
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 HP:0040137 Comodogenic acne 
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 HP:0200070 Peripheral retinal atrophy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000118271 TTR / P02766 / transthyretin  / complex / reaction
 ENSG00000137868 STRA6 / Q9BX79 / stimulated by retinoic acid 6  / reaction / complex






 

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