ENSG00000137868


Homo sapiens

Features
Gene ID: ENSG00000137868
  
Biological name :STRA6
  
Synonyms : Q9BX79 / stimulated by retinoic acid 6 / STRA6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: -1
Band: q24.1
Gene start: 74179466
Gene end: 74212267
  
Corresponding Affymetrix probe sets: 1569334_at (Human Genome U133 Plus 2.0 Array)   1569335_a_at (Human Genome U133 Plus 2.0 Array)   221701_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000479112
Ensembl peptide - ENSP00000459546
Ensembl peptide - ENSP00000461799
Ensembl peptide - ENSP00000326085
Ensembl peptide - ENSP00000378537
Ensembl peptide - ENSP00000400403
Ensembl peptide - ENSP00000407176
Ensembl peptide - ENSP00000410221
Ensembl peptide - ENSP00000413012
Ensembl peptide - ENSP00000440238
Ensembl peptide - ENSP00000456609
Ensembl peptide - ENSP00000458204
Ensembl peptide - ENSP00000458734
Ensembl peptide - ENSP00000458827
NCBI entrez gene - 64220     See in Manteia.
OMIM - 610745
RefSeq - NM_001199041
RefSeq - NM_001142617
RefSeq - NM_001142618
RefSeq - NM_001142619
RefSeq - NM_001142620
RefSeq - NM_001199040
RefSeq - NM_001199042
RefSeq - NM_022369
RefSeq - XM_011521883
RefSeq - XM_011521884
RefSeq - XM_017022478
RefSeq - XM_017022479
RefSeq - XM_017022480
RefSeq Peptide - NP_001136089
RefSeq Peptide - NP_001136090
RefSeq Peptide - NP_001136091
RefSeq Peptide - NP_001136092
RefSeq Peptide - NP_001185969
RefSeq Peptide - NP_001185970
RefSeq Peptide - NP_001185971
RefSeq Peptide - NP_071764
swissprot - I3L1C7
swissprot - I3L2B6
swissprot - I3NI08
swissprot - J3KQI6
swissprot - Q9BX79
swissprot - I3L0M6
Ensembl - ENSG00000137868
  
Related genetic diseases (OMIM): 601186 - Microphthalmia, isolated, with coloboma 8, 601186
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 stra6ENSDARG00000051874Danio rerio
 STRA6ENSGALG00000001449Gallus gallus
 Stra6ENSMUSG00000032327Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR026612  Receptor for retinol uptake STRA6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001523 retinoid metabolic process TAS
 biological_processGO:0001568 blood vessel development IMP
 biological_processGO:0001822 kidney development IMP
 biological_processGO:0003184 pulmonary valve morphogenesis IMP
 biological_processGO:0003281 ventricular septum development IMP
 biological_processGO:0007507 heart development IMP
 biological_processGO:0007612 learning IMP
 biological_processGO:0007631 feeding behavior IMP
 biological_processGO:0030324 lung development IMP
 biological_processGO:0030325 adrenal gland development IMP
 biological_processGO:0030540 female genitalia development IMP
 biological_processGO:0034633 retinol transport IDA
 biological_processGO:0035461 vitamin transmembrane transport IEA
 biological_processGO:0042297 vocal learning IMP
 biological_processGO:0043010 camera-type eye development IMP
 biological_processGO:0043583 ear development IMP
 biological_processGO:0043585 nose morphogenesis IMP
 biological_processGO:0048286 lung alveolus development IMP
 biological_processGO:0048520 positive regulation of behavior IMP
 biological_processGO:0048546 digestive tract morphogenesis IMP
 biological_processGO:0048566 embryonic digestive tract development IMP
 biological_processGO:0048589 developmental growth IMP
 biological_processGO:0048745 smooth muscle tissue development IMP
 biological_processGO:0048844 artery morphogenesis IMP
 biological_processGO:0050890 cognition IMP
 biological_processGO:0050905 neuromuscular process IMP
 biological_processGO:0060322 head development IMP
 biological_processGO:0060323 head morphogenesis IMP
 biological_processGO:0060325 face morphogenesis IMP
 biological_processGO:0060426 lung vasculature development IMP
 biological_processGO:0060539 diaphragm development IMP
 biological_processGO:0060900 embryonic camera-type eye formation IMP
 biological_processGO:0061029 eyelid development in camera-type eye IMP
 biological_processGO:0061038 uterus morphogenesis IMP
 biological_processGO:0061143 alveolar primary septum development IMP
 biological_processGO:0061156 pulmonary artery morphogenesis IMP
 biological_processGO:0061205 paramesonephric duct development IMP
 biological_processGO:0097070 ductus arteriosus closure IMP
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0032991 protein-containing complex IDA
 molecular_functionGO:0016918 retinal binding IEA
 molecular_functionGO:0019841 retinol binding IEA
 molecular_functionGO:0034632 retinol transmembrane transporter activity IDA
 molecular_functionGO:0090482 vitamin transmembrane transporter activity IEA


Pathways (from Reactome)
Pathway description
Retinoid cycle disease events
The canonical retinoid cycle in rods (twilight vision)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000013 Hypoplastic uterus 
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 HP:0000023 Inguinal hernia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000085 Horseshoe kidney 
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 HP:0000089 Renal hypoplasia 
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 HP:0000125 Pelvic kidney "A developmental defect in which a kidney is located in an abnormal anatomic position within the pelvis." [HPO:curators]
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 HP:0000126 Hydronephrosis 
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 HP:0000130 Abnormality of the uterus "An abnormality of the uterus (womb)." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000528 Anophthalmia "Absence of a true eyeball." [HPO:curators]
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000776 Diaphragmatic hernia "Diaphragmatic hernia is the result of a developmental defect causing an abnormal opening in the diaphragm, through which abdominal organs (stomach, spleen, liver, and intestines) can protrude into the thoracic cavity. This usually causes respiratory distress in the newborn period." [HPO:curators]
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 HP:0000813 Bicornuate uterus 
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 HP:0001249 Mental retardation 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0001642 Pulmonic stenosis "A narrowing of the right ventricular outflow tract that can occur at the pulmonary valve (valvular stenosis) or just below the pulmonary valve (infundibular stenosis). Infundibular pulmonic stenosis is mostly caused by overgrowth of the heart muscle wall (hypertrophy of the septoparietal trabeculae). Pulmonic stenosis is often seen as a part of Fallot s tetralogy, in which case the events leading to the formation of the overriding aorta are also believed to be a cause of the pulmonic stenosis. The pulmonic stenosis is the major cause of the malformations seen in patients with Fallot tetralogy, with the other associated malformations acting as compensatory mechanisms to the pulmonic stenosis. The degree of stenosis varies between individuals with TOF, and is the primary determinant of symptoms and severity. This malformation is infrequently described as sub-pulmonary stenosis or subpulmonary obstruction." [HPO:curators]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001660 Persistant truncus arteriosus "Persistent Truncus Arteriosus results from a failure of the truncus arteriosus to close." [HPO:curators]
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 HP:0001680 Coarctation of aorta "Coarctation of the aorta is a narrowing or constriction of the aorta just distal to the origin of the left subclavian artery." [HPO:curators]
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 HP:0001734 Annular pancreas 
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 HP:0001750 Single ventricle 
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 HP:0002089 Pulmonary hypoplasia 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002187 Mental retardation, profound "Severe mental retardation is defined as an intelligence quotient (IQ) below 20." [HPO:curators]
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 HP:0002627 Right aortic arch 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004712 Malrotation of the kidney 
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 HP:0004935 Pulmonary artery atresia 
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 HP:0005156 Hypoplastic left atrium 
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 HP:0005311 Agenesis of pulmonary vessels 
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 HP:0005944 Bilateral lung agenesis 
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 HP:0006270 Hypoplastic spleen "Underdevelopment of the spleen." [HPO:curators]
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 HP:0007633 Bilateral microphthalmos "A developmental anomaly characterized by abnormal smallness of both eyes." [HPO:curators]
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 HP:0009110 Diaphragmatic eventration "A congenital failure of muscular development of part or all of one or both hemidiaphragms, resulting in superior displacement of abdominal viscera and altered lung development." [HPO:curators]
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 HP:0025408 Abnormal spleen morphology "Any anomaly of the structure of the spleen." []
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0100800 Aplasia/Hypoplasia of the pancreas "A congential underdevelopment (aplasia or hypoplasia) of the pancreas." [HPO:sdoelken]
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 HP:0100867 Duodenal stenosis "The narrowing or partial blockage of a portion of the duodenum." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000118271 TTR / P02766 / transthyretin  / complex / reaction
 ENSG00000138207 RBP4 / P02753 / retinol binding protein 4  / reaction / complex






 

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