ENSDARG00000101220


Danio rerio

Features
Gene ID: ENSDARG00000101220
  
Biological name :polrmt
  
Synonyms : polrmt / polymerase (RNA) mitochondrial (DNA directed)
  
Possible biological names infered from orthology : O00411 / Q8BKF1 / RNA polymerase mitochondrial
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 19018602
Gene end: 19102311
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000135213
Ensembl peptide - ENSDARP00000138471
NCBI entrez gene - 100034434     See in Manteia.
swissprot - A0A0R4ILV6
swissprot - A0A0R4IRA9
ZFIN ID - ZDB-GENE-030131-1528
Ensembl - ENSDARG00000101220
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 POLRMTENSGALG00000001377Gallus gallus
 O00411ENSG00000099821Homo sapiens
 PolrmtENSMUSG00000020329Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002092  DNA-directed RNA polymerase, phage-type
 IPR002885  Pentatricopeptide repeat
 IPR024075  DNA-directed RNA polymerase, helix hairpin domain superfamily
 IPR029262  DNA-directed RNA polymerase, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA


Pathways (from Reactome)
Pathway description
Mitochondrial transcription initiation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000074756 tfb2m / transcription factor B2, mitochondrial / Q3TL26* / Q9H5Q4*  / complex






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr