ENSDARG00000101474


Danio rerio

Features
Gene ID: ENSDARG00000101474
  
Biological name :snapc3
  
Synonyms : small nuclear RNA activating complex, polypeptide 3 / snapc3
  
Possible biological names infered from orthology : Q92966 / Q9D2C9
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 28067771
Gene end: 28089650
  
Corresponding Affymetrix probe sets: Dr.16011.1.S1_at (Zebrafish Array)   Dr.45.1.A1_at (Zebrafish Array)   NM_201115_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000133189
Ensembl peptide - ENSDARP00000138943
NCBI entrez gene - 394090     See in Manteia.
RefSeq - NM_201115
RefSeq Peptide - NP_957409
swissprot - F1QWM0
swissprot - A0A0R4IIP7
ZFIN ID - ZDB-GENE-040426-971
Ensembl - ENSDARG00000101474
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNAPC3ENSGALG00000011323Gallus gallus
 Q92966ENSG00000164975Homo sapiens
 Q9D2C9ENSMUSG00000028483Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR022042  snRNA-activating protein complex, subunit 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006366 transcription by RNA polymerase II IBA
 biological_processGO:0006397 mRNA processing IMP
 biological_processGO:0008380 RNA splicing IMP
 biological_processGO:0009301 snRNA transcription IBA
 biological_processGO:0030217 T cell differentiation IMP
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003677 DNA binding IBA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000037 anatomical structure anatomical structure increased amount , abnormal
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 ZFA:0001078 thymus thymus decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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