ENSG00000164975


Homo sapiens

Features
Gene ID: ENSG00000164975
  
Biological name :SNAPC3
  
Synonyms : Q92966 / small nuclear RNA activating complex polypeptide 3 / SNAPC3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: 1
Band: p22.3
Gene start: 15422704
Gene end: 15465953
  
Corresponding Affymetrix probe sets: 204001_at (Human Genome U133 Plus 2.0 Array)   210465_s_at (Human Genome U133 Plus 2.0 Array)   222286_at (Human Genome U133 Plus 2.0 Array)   229712_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000370200
Ensembl peptide - ENSP00000436699
Ensembl peptide - ENSP00000370177
Ensembl peptide - ENSP00000483273
Ensembl peptide - ENSP00000391832
Ensembl peptide - ENSP00000432393
NCBI entrez gene - 6619     See in Manteia.
OMIM - 602348
RefSeq - XM_017015056
RefSeq - XM_017015057
RefSeq - NM_001039697
RefSeq Peptide - NP_001034786
swissprot - Q5T284
swissprot - Q5T282
swissprot - Q92966
Ensembl - ENSG00000164975
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snapc3ENSDARG00000101474Danio rerio
 SNAPC3ENSGALG00000011323Gallus gallus
 Q9D2C9ENSMUSG00000028483Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR022042  snRNA-activating protein complex, subunit 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II TAS
 biological_processGO:0006383 transcription by RNA polymerase III TAS
 biological_processGO:0009301 snRNA transcription TAS
 biological_processGO:0042795 snRNA transcription by RNA polymerase II TAS
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0016604 nuclear body IDA
 molecular_functionGO:0003677 DNA binding IBA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes
RNA Polymerase III Abortive And Retractive Initiation
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr