ENSDARG00000101808


Danio rerio

Features
Gene ID: ENSDARG00000101808
  
Biological name :si:ch211-271b14.1
  
Synonyms : si:ch211-271b14.1
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 67835595
Gene end: 67860319
  
Corresponding Affymetrix probe sets: Dr.20784.1.A1_at (Zebrafish Array)   NM_001077760_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000130145
Ensembl peptide - ENSDARP00000136346
NCBI entrez gene - 777712     See in Manteia.
RefSeq - NM_001077760
RefSeq Peptide - NP_001071228
swissprot - A0A0N4SU43
swissprot - A0A0N4STP0
ZFIN ID - ZDB-GENE-141212-386
Ensembl - ENSDARG00000101808
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
matr3l1.1 / matrin 3-like 1.1 / MATR3* / Q8K310* / P43243* / Gm28285* / matrin 3*ENSDARG0000000039423
matr3l1.1 / matrin 3-like 1.1 / RBM20* / Q5T481* / Q3UQS8* / RNA-binding protein 20 * / RNA binding motif protein 20*ENSDARG000000011628


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR000690  Matrin/U1-C, C2H2-type zinc finger
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR013087  Zinc finger C2H2-type
 IPR034928  Matrin-3, RNA recognition motif 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr