ENSDARG00000000394


Danio rerio

Features
Gene ID: ENSDARG00000000394
  
Biological name :matr3l1.1
  
Synonyms : matr3l1.1 / matrin 3-like 1.1
  
Possible biological names infered from orthology : Gm28285 / MATR3 / matrin 3 / P43243 / Q8K310
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 25079782
Gene end: 25099988
  
Corresponding Affymetrix probe sets: Dr.3362.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000117572
Ensembl peptide - ENSDARP00000122692
Ensembl peptide - ENSDARP00000151559
NCBI entrez gene - 556290     See in Manteia.
RefSeq - NM_001122784
RefSeq Peptide - NP_001116256
swissprot - F1QTW8
swissprot - Q800H6
ZFIN ID - ZDB-GENE-030616-40
Ensembl - ENSDARG00000000394
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MATR3ENSGALG00000002478Gallus gallus
 MATR3ENSG00000015479Homo sapiens
 MATR3ENSG00000280987Homo sapiens
 Gm28285ENSMUSG00000099703Mus musculus
 Matr3ENSMUSG00000037236Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch211-271b14.1ENSDARG0000010180818
matr3l1.1 / matrin 3-like 1.1 / RBM20* / Q5T481* / Q3UQS8* / RNA-binding protein 20 * / RNA binding motif protein 20*ENSDARG000000011627


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR000690  Matrin/U1-C, C2H2-type zinc finger
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR034928  Matrin-3, RNA recognition motif 1
 IPR034930  Matrin-3, RNA recognition motif 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr