ENSG00000015479


Homo sapiens

Features
Gene ID: ENSG00000015479
  
Biological name :MATR3
  
Synonyms : MATR3 / matrin 3 / P43243
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q31.2
Gene start: 139293648
Gene end: 139331677
  
Corresponding Affymetrix probe sets: 1558093_s_at (Human Genome U133 Plus 2.0 Array)   200624_s_at (Human Genome U133 Plus 2.0 Array)   200626_s_at (Human Genome U133 Plus 2.0 Array)   214363_s_at (Human Genome U133 Plus 2.0 Array)   228012_at (Human Genome U133 Plus 2.0 Array)   238993_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000422137
Ensembl peptide - ENSP00000422590
Ensembl peptide - ENSP00000482895
Ensembl peptide - ENSP00000480093
Ensembl peptide - ENSP00000427557
Ensembl peptide - ENSP00000426801
Ensembl peptide - ENSP00000426743
Ensembl peptide - ENSP00000426030
Ensembl peptide - ENSP00000425150
Ensembl peptide - ENSP00000424646
Ensembl peptide - ENSP00000423587
Ensembl peptide - ENSP00000423290
Ensembl peptide - ENSP00000422700
Ensembl peptide - ENSP00000422649
Ensembl peptide - ENSP00000378284
Ensembl peptide - ENSP00000421145
Ensembl peptide - ENSP00000422054
NCBI entrez gene - 9782     See in Manteia.
OMIM - 164015
RefSeq - NM_018834
RefSeq - NM_001194955
RefSeq - NM_001194956
RefSeq Peptide - NP_001181884
RefSeq Peptide - NP_001181885
RefSeq Peptide - NP_061322
swissprot - D6RBI2
swissprot - D6RAY2
swissprot - D6R9F3
swissprot - D6R991
swissprot - B3KM87
swissprot - A0A1B0GX04
swissprot - H0Y8T4
swissprot - P43243
swissprot - D6RIA2
swissprot - Q68E03
swissprot - D6REM6
swissprot - D6REK4
swissprot - D6RE02
swissprot - D6RBS2
swissprot - D6RBK5
Ensembl - ENSG00000015479
  
Related genetic diseases (OMIM): 606070 - Amyotrophic lateral sclerosis 21, 606070
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 matr3l1.1ENSDARG00000000394Danio rerio
 MATR3ENSGALG00000002478Gallus gallus
 Matr3ENSMUSG00000037236Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MATR3 / matrin 3ENSG00000280987100
RBM20 / Q5T481 / RNA binding motif protein 20ENSG0000020386721


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR000690  Matrin/U1-C, C2H2-type zinc finger
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR034928  Matrin-3, RNA recognition motif 1
 IPR034930  Matrin-3, RNA recognition motif 2
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002218 activation of innate immune response IDA
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0010608 posttranscriptional regulation of gene expression IDA
 biological_processGO:0045087 innate immune response IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005637 nuclear inner membrane TAS
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0016363 nuclear matrix IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005198 structural molecule activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0035198 miRNA binding IDA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000217 Xerostomia "Dryness of the mouth due to salivary gland dysfunction." [HPO:curators]
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 HP:0000712 Emotional lability 
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 HP:0000713 Agitation 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000726 Dementia 
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 HP:0000739 Anxiety 
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 HP:0000762 Decreased nerve conduction velocities 
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001283 Bulbar palsy "Bulbar weakness (or bulbar palsy) refers to bilateral impairment of function of the lower cranial nerves IX, X, XI and XII, which occurs due to lower motor neuron lesion either at nuclear or fascicular level in the medulla or from bilateral lesions of the lower cranial nerves outside the brain-stem. Bulbar weakness is often associated with difficulty in chewing, weakness of the facial muscles, dysarthria, palatal weakness and regurgitation of fluids, dysphagia, and dysphonia." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001609 Hoarse voice 
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 HP:0001739 Abnormality of the nasopharynx 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002017 Nausea and vomiting 
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 HP:0002094 Dyspnea 
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 HP:0002127 Upper motor neuron abnormality 
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 HP:0002180 Neurodegeneration 
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 HP:0002366 Lower motor neuron signs 
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0002483 Bulbar signs 
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 HP:0002747 Respiratory insufficiency due to muscle weakness 
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 HP:0002835 Aspiration 
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 HP:0002878 Early respiratory failure 
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 HP:0002936 Distal sensory impairment 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003324 Generalized muscle weakness "Generalized weakness or decreased strength of the muscles." [HPO:curators]
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 HP:0003394 Muscle cramps 
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 HP:0003470 Paralysis "Paralysis of voluntary muscles means loss of contraction due to interruption of one or more motor pathways from the brain to the muscle fibers. Although the word paralysis is often used interchangeably to mean either complete or partial loss of muscle strength, it is preferable to use paralysis or plegia for complete or severe loss of muscle strength, and paresis for partial or slight loss. Motor paralysis results from deficits of the upper motor neurons (corticospinal, corticobulbar, or subcorticospinal). Motor paralysis is often accompanied by an impairment in the facility of movement." [HPO:curators]
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 HP:0003547 Shoulder girdle muscle weakness "The shoulder, or pectoral, girdle is composed of the clavicles and the scapulae. Shoulder-girdle weakness refers to lack of strength of the muscles attaching to these bones, that is, lack of strength of the muscles around the shoulders." [HPO:curators]
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 HP:0003581 Onset in adulthood 
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 HP:0003805 Rimmed vacuoles 
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 HP:0003828 Variable expressivity 
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 HP:0005945 Laryngeal obstruction 
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 HP:0007354 Amyotrophic lateral sclerosis 
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 HP:0008756 Bowing of the vocal cords 
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012531 Pain "An unpleasant sensory and emotional experience associated with actual or potential tissue damage, or described in terms of such damage." [ORCID:0000-0001-5208-3432]
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 HP:0030195 Fatigable weakness of swallowing muscles "A type of weakness of the muscles involved in swallowing that occurs after a muscle group is used and lessens if the muscle group has some rest. That is, there is diminution of strength with repetitive muscle actions." [pmid:17986328, UK:rheller]
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 HP:0030196 Fatigable weakness of respiratory muscles "A type of weakness of the muscles involved in breathing (respiration) that occurs after a muscle group is used and lessens if the muscle group has some rest. That is, there is diminution of strength with repetitive muscle actions." [UNCL:mbertoli]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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