ENSGALG00000002478


Gallus gallus

Features
Gene ID: ENSGALG00000002478
  
Biological name :MATR3
  
Synonyms : MATR3
  
Possible biological names infered from orthology : Gm28285 / matrin 3 / P43243 / Q8K310
  
Species: Gallus gallus
  
Chr. number: 13
Strand: -1
Band:
Gene start: 2454668
Gene end: 2480656
  
Corresponding Affymetrix probe sets: Gga.1968.1.S1_at (Chicken Array)   Gga.1968.1.S2_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000063084
Ensembl peptide - ENSGALP00000003898
NCBI entrez gene - 373948     See in Manteia.
RefSeq - NM_204147
RefSeq Peptide - NP_989478
swissprot - Q8UWC5
swissprot - A0A1L1RW62
Ensembl - ENSGALG00000002478
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 matr3l1.1ENSDARG00000000394Danio rerio
 MATR3ENSG00000015479Homo sapiens
 MATR3ENSG00000280987Homo sapiens
 Gm28285ENSMUSG00000099703Mus musculus
 Matr3ENSMUSG00000037236Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RBM20 / RNA binding motif protein 20 / Q3UQS8* / Q5T481* / RNA-binding protein 20 *ENSGALG0000000869719


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR000690  Matrin/U1-C, C2H2-type zinc finger
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr