ENSGALG00000008697


Gallus gallus

Features
Gene ID: ENSGALG00000008697
  
Biological name :RBM20
  
Synonyms : RBM20 / RNA binding motif protein 20
  
Possible biological names infered from orthology : Q3UQS8 / Q5T481 / RNA-binding protein 20
  
Species: Gallus gallus
  
Chr. number: 6
Strand: 1
Band:
Gene start: 26073320
Gene end: 26142996
  
Corresponding Affymetrix probe sets: GgaAffx.5467.1.S1_at (Chicken Array)   GgaAffx.5475.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000014140
NCBI entrez gene - 423892     See in Manteia.
RefSeq - XM_015288974
RefSeq - XM_015288975
RefSeq - XM_015288976
RefSeq - XM_015288977
RefSeq - XM_015288978
RefSeq - XM_015288973
swissprot - F1NIY4
Ensembl - ENSGALG00000008697
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 matr3l1.1ENSDARG00000001162Danio rerio
 RBM20ENSG00000203867Homo sapiens
 Rbm20ENSMUSG00000043639Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MATR3 / P43243* / Q8K310* / Gm28285* / matrin 3*ENSGALG0000000247815


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR000690  Matrin/U1-C, C2H2-type zinc finger
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007507 heart development IEA
 biological_processGO:0033120 positive regulation of RNA splicing IEA
 biological_processGO:0043484 regulation of RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr