ENSDARG00000102024


Danio rerio

Features
Gene ID: ENSDARG00000102024
  
Biological name :chmp6b
  
Synonyms : charged multivesicular body protein 6b / chmp6b / Q503V0
  
Possible biological names infered from orthology : charged multivesicular body protein 6 / CHMP6 / P0C0A3 / Q96FZ7
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 35587971
Gene end: 35707358
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000130680
Ensembl peptide - ENSDARP00000150680
Ensembl peptide - ENSDARP00000135498
NCBI entrez gene - 445397     See in Manteia.
RefSeq - NM_001003874
RefSeq Peptide - NP_001003874
swissprot - A0A0R4IMY8
swissprot - A0A0R4IC87
swissprot - B2GPC9
swissprot - Q503V0
ZFIN ID - ZDB-GENE-040924-2
Ensembl - ENSDARG00000102024
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CHMP6ENSGALG00000026428Gallus gallus
 CHMP6ENSG00000176108Homo sapiens
 Chmp6ENSMUSG00000025371Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
chmp6a / charged multivesicular body protein 6a / CHMP6* / P0C0A3* / Q96FZ7* / charged multivesicular body protein 6*ENSDARG0000009745165


Protein motifs (from Interpro)
Interpro ID Name
 IPR005024  Snf7 family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007034 vacuolar transport IEA
 biological_processGO:0015031 protein transport IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0012505 endomembrane system IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031902 late endosome membrane IEA


Pathways (from Reactome)
Pathway description
Macroautophagy
Endosomal Sorting Complex Required For Transport (ESCRT)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
Show

 ZFA:0000123 liver liver quality , abnormal
liver hypoplastic , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
head necrotic , abnormal
Show

 ZFA:0001115 trunk trunk necrotic , abnormal
Show

 ZFA:0001439 anatomical system anatomical system quality , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr