ENSDARG00000102569


Danio rerio

Features
Gene ID: ENSDARG00000102569
  
Biological name :polr3a
  
Synonyms : polr3a / polymerase (RNA) III (DNA directed) polypeptide A
  
Possible biological names infered from orthology : O14802 / RNA polymerase III subunit A
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 47794089
Gene end: 47862432
  
Corresponding Affymetrix probe sets: Dr.5495.1.S1_at (Zebrafish Array)   Dr.5495.2.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000139214
NCBI entrez gene - 572258     See in Manteia.
swissprot - A0A0R4IV41
ZFIN ID - ZDB-GENE-050208-103
Ensembl - ENSDARG00000102569
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 POLR3AENSGALG00000004947Gallus gallus
 O14802ENSG00000148606Homo sapiens
 Polr3aENSMUSG00000025280Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
polr2a / polymerase (RNA) II (DNA directed) polypeptide A / P08775* / DNA-directed RNA polymerase II subunit RPB1 *ENSDARG0000009996634


Protein motifs (from Interpro)
Interpro ID Name
 IPR000722  RNA polymerase, alpha subunit
 IPR006592  RNA polymerase, N-terminal
 IPR007066  RNA polymerase Rpb1, domain 3
 IPR007080  RNA polymerase Rpb1, domain 1
 IPR007081  RNA polymerase Rpb1, domain 5
 IPR007083  RNA polymerase Rpb1, domain 4
 IPR035697  DNA-directed RNA polymerase III subunit RPC1, N-terminal
 IPR035698  DNA-directed RNA polymerase III subunit RPC1, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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