ENSGALG00000004947


Gallus gallus

Features
Gene ID: ENSGALG00000004947
  
Biological name :POLR3A
  
Synonyms : DNA-directed RNA polymerase III subunit RPC1 / POLR3A
  
Possible biological names infered from orthology : O14802 / polymerase (RNA) III (DNA directed) polypeptide A / RNA polymerase III subunit A
  
Species: Gallus gallus
  
Chr. number: 6
Strand: 1
Band:
Gene start: 13158194
Gene end: 13188974
  
Corresponding Affymetrix probe sets: Gga.11367.1.S1_at (Chicken Array)   GgaAffx.11939.1.S1_at (Chicken Array)   GgaAffx.11939.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000007915
NCBI entrez gene - 423727     See in Manteia.
RefSeq - NM_001006500
RefSeq - XM_015288214
RefSeq Peptide - NP_001006500
swissprot - F1NIK7
Ensembl - ENSGALG00000004947
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 polr3aENSDARG00000102569Danio rerio
 O14802ENSG00000148606Homo sapiens
 Polr3aENSMUSG00000025280Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000722  RNA polymerase, alpha subunit
 IPR006592  RNA polymerase, N-terminal
 IPR007066  RNA polymerase Rpb1, domain 3
 IPR007080  RNA polymerase Rpb1, domain 1
 IPR007081  RNA polymerase Rpb1, domain 5
 IPR007083  RNA polymerase Rpb1, domain 4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0032728 positive regulation of interferon-beta production IEA
 biological_processGO:0045087 innate immune response IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005666 DNA-directed RNA polymerase III complex IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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