ENSDARG00000103087


Danio rerio

Features
Gene ID: ENSDARG00000103087
  
Biological name :FQ377628.1
  
Synonyms : FQ377628.1
  
Possible biological names infered from orthology : claudin 18 / CLDN18 / P56856 / P56857
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 22566082
Gene end: 22569488
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000140824
NCBI entrez gene - 557209     See in Manteia.
swissprot - A0A0G2L7R9
Ensembl - ENSDARG00000103087
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CLDN18ENSGALG00000006593Gallus gallus
 CLDN18ENSG00000066405Homo sapiens
 Cldn18ENSMUSG00000032473Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cldn15la / claudin 15-like aENSDARG0000001608124
cldn15lb / claudin 15-like bENSDARG0000010084424
cldn10a / claudin 10a / CLDN10* / P78369* / Q9Z0S6* / claudin 10*ENSDARG0000005893719
cldn10b / claudin 10b / CLDN10* / P78369* / claudin 10*ENSDARG0000010452819
cldn15a / claudin 15a / CLDN15* / P56746* / Q9Z0S5* / claudin 15*ENSDARG0000011204919
CABZ01067558.1ENSDARG0000009959818
si:busm1-52i16.2ENSDARG0000005893017
zgc:153311ENSDARG0000001596417
si:ch211-181l5.2ENSDARG0000005890616
cldn15b / claudin 15b / CLDN15* / P56746* / Q9Z0S5* / claudin 15*ENSDARG0000010110916
CLDN22 / si:dkey-98f17.3 / CLDN24* / A6NM45* / Q8N7P3* / Q9D7U6* / claudin 24* / claudin 22*ENSDARG0000007613715
BX649608.2ENSDARG0000011560815
cldn10l2 / claudin 10-like 2ENSDARG0000010504213


Protein motifs (from Interpro)
Interpro ID Name
 IPR003928  Claudin-18
 IPR004031  PMP-22/EMP/MP20/Claudin superfamily
 IPR006187  Claudin
 IPR017974  Claudin, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005923 bicellular tight junction IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr