ENSDARG00000103483


Danio rerio

Features
Gene ID: ENSDARG00000103483
  
Biological name :litaf
  
Synonyms : lipopolysaccharide-induced TNF factor / litaf / Q6GMG8
  
Possible biological names infered from orthology : Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog / Q99732 / Q9JLJ0
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 43825785
Gene end: 43831030
  
Corresponding Affymetrix probe sets: Dr.20110.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000130545
Ensembl peptide - ENSDARP00000137959
Ensembl peptide - ENSDARP00000130720
NCBI entrez gene - 431731     See in Manteia.
swissprot - A0A0R4IP68
swissprot - A0A0R4IC98
swissprot - Q6GMG8
ZFIN ID - ZDB-GENE-040704-23
Ensembl - ENSDARG00000103483
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LITAFENSGALG00000003217Gallus gallus
 LITAFENSG00000189067Homo sapiens
 LitafENSMUSG00000022500Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cdip1 / cell death-inducing p53 target 1 / Q9DB75* / Q9H305* / Mus musculus cell death inducing Trp53 target 1 (Cdip1), transcript variant 5, mRNA.*ENSDARG0000007611831
si:ch211-202h22.7ENSDARG0000007391230
si:ch211-202h22.8ENSDARG0000007813828
si:ch211-202h22.9ENSDARG0000007998028
si:dkeyp-75b4.8ENSDARG0000007754226
LO018550.2ENSDARG0000011158325
Q6DGM1 / ubald1a / UBA-like domain containing 1a / Gm5767* / AC022167.5* / predicted 5767 *ENSDARG0000000236221
si:ch211-157c3.4 / Gm5767* / AC022167.5* / predicted 5767 *ENSDARG0000008709321


Protein motifs (from Interpro)
Interpro ID Name
 IPR006629  LPS-induced tumour necrosis factor alpha factor


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0009898 cytoplasmic side of plasma membrane ISS
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031901 early endosome membrane IEA
 cellular_componentGO:0031902 late endosome membrane IEA
 cellular_componentGO:0098559 cytoplasmic side of early endosome membrane ISS
 cellular_componentGO:0098560 cytoplasmic side of late endosome membrane ISS
 cellular_componentGO:0098574 cytoplasmic side of lysosomal membrane ISS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0008270 zinc ion binding ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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