ENSDARG00000103690


Danio rerio

Features
Gene ID: ENSDARG00000103690
  
Biological name :vipas39
  
Synonyms : Q5TYV4 / vipas39 / VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
  
Possible biological names infered from orthology : Q8BGQ1 / Q9H9C1
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 18352770
Gene end: 18382892
  
Corresponding Affymetrix probe sets: Dr.4192.1.A1_at (Zebrafish Array)   NM_001001836_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000132081
Ensembl peptide - ENSDARP00000157217
Ensembl peptide - ENSDARP00000138365
Ensembl peptide - ENSDARP00000138319
NCBI entrez gene - 415096     See in Manteia.
RefSeq - NM_001001836
RefSeq Peptide - NP_001001836
swissprot - A0A0R4IPY1
swissprot - A0A0R4IF88
swissprot - A0A0R4IQ05
swissprot - Q5TYV4
ZFIN ID - ZDB-GENE-040520-1
Ensembl - ENSDARG00000103690
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VIPAS39ENSGALG00000010459Gallus gallus
 Q9H9C1ENSG00000151445Homo sapiens
 Q8BGQ1ENSMUSG00000021038Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006925  Vps16, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0061008 hepaticobiliary system development IMP
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005770 late endosome IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0055037 recycling endosome IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0005164 bile ductule bile ductule decreased amount , abnormal
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 ZFA:0005169 intrahepatic bile duct intrahepatic bile duct decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr