ENSMUSG00000021038


Mus musculus

Features
Gene ID: ENSMUSG00000021038
  
Biological name :Vipas39
  
Synonyms : Q8BGQ1 / Vipas39 / VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
  
Possible biological names infered from orthology : Q9H9C1
  
Species: Mus musculus
  
Chr. number: 12
Strand: -1
Band: D2
Gene start: 87238868
Gene end: 87266256
  
Corresponding Affymetrix probe sets: 10401753 (MoGene1.0st)   1416096_at (Mouse Genome 430 2.0 Array)   1438983_x_at (Mouse Genome 430 2.0 Array)   1446291_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000021426
Ensembl peptide - ENSMUSP00000072527
Ensembl peptide - ENSMUSP00000137190
NCBI entrez gene - 104799     See in Manteia.
MGI - MGI:2144805
RefSeq - XM_011243977
RefSeq - NM_001142580
RefSeq - NM_001142581
RefSeq - NM_134044
RefSeq - XM_006515339
RefSeq - XM_011243976
RefSeq Peptide - NP_001136052
RefSeq Peptide - NP_001136053
RefSeq Peptide - NP_598805
swissprot - Q8BGQ1
Ensembl - ENSMUSG00000021038
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q5TYV4ENSDARG00000103690Danio rerio
 VIPAS39ENSGALG00000010459Gallus gallus
 Q9H9C1ENSG00000151445Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006925  Vps16, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006886 intracellular protein transport ISO
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0008333 endosome to lysosome transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0017185 peptidyl-lysine hydroxylation ISO
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030199 collagen fibril organization IMP
 biological_processGO:0032963 collagen metabolic process ISO
 biological_processGO:0043687 post-translational protein modification IMP
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome ISO
 cellular_componentGO:0005770 late endosome IEA
 cellular_componentGO:0005794 Golgi apparatus ISO
 cellular_componentGO:0030897 HOPS complex IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0055037 recycling endosome IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000414 alopecia "absence of hair or loss of hair; not usually in reference to primary genetic hairlessness but may be due to dietary, stress, secondary to immune condition" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, J:30772, J:33796]
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Allelic Composition: Vipas39tm1c(KOMP)Mbp/Vipas39tm1c(KOMP)Mbp,Gt(ROSA)26Sortm1(cre/ERT2)Tyj/Gt(ROSA)26Sor+
Genetic Background: involves: C57BL/6 * C57BL/6J * C57BL/6N

 MP:0001192 scaly skin "skin covered with shedding scales or flakes" [J:65146]
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Allelic Composition: Vipas39tm1c(KOMP)Mbp/Vipas39tm1c(KOMP)Mbp,Gt(ROSA)26Sortm1(cre/ERT2)Tyj/Gt(ROSA)26Sor+
Genetic Background: involves: C57BL/6 * C57BL/6J * C57BL/6N

 MP:0003853 dry skin "skin characterized by the lack of natural or normal moisture" [monikat:Monika Tomczuk, Mouse Genome Informatics Curator]
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Allelic Composition: Vipas39tm1c(KOMP)Mbp/Vipas39tm1c(KOMP)Mbp,Gt(ROSA)26Sortm1(cre/ERT2)Tyj/Gt(ROSA)26Sor+
Genetic Background: involves: C57BL/6 * C57BL/6J * C57BL/6N

 MP:0011643 abnormal tendon collagen fibril morphology "any structural anomaly of the connective tissue bundles in the extracellular matrix of tendon tissue that are composed of collagen, and play a role in tissue strength and elasticity" [MGI:csmith]
Show

Allelic Composition: Vipas39tm1c(KOMP)Mbp/Vipas39tm1c(KOMP)Mbp,Gt(ROSA)26Sortm1(cre/ERT2)Tyj/Gt(ROSA)26Sor+
Genetic Background: involves: C57BL/6 * C57BL/6J * C57BL/6N

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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