ENSG00000151445


Homo sapiens

Features
Gene ID: ENSG00000151445
  
Biological name :VIPAS39
  
Synonyms : Q9H9C1 / VIPAS39 / VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: -1
Band: q24.3
Gene start: 77426675
Gene end: 77457952
  
Corresponding Affymetrix probe sets: 218431_at (Human Genome U133 Plus 2.0 Array)   233140_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000452191
Ensembl peptide - ENSP00000452176
Ensembl peptide - ENSP00000452181
Ensembl peptide - ENSP00000313098
Ensembl peptide - ENSP00000339122
Ensembl peptide - ENSP00000404815
Ensembl peptide - ENSP00000451857
NCBI entrez gene - 63894     See in Manteia.
OMIM - 613401
RefSeq - XM_017021581
RefSeq - NM_001193314
RefSeq - NM_001193315
RefSeq - NM_001193316
RefSeq - NM_001193317
RefSeq - NM_022067
RefSeq - XM_011537066
RefSeq - XM_017021579
RefSeq - XM_017021580
RefSeq Peptide - NP_001180245
RefSeq Peptide - NP_001180246
RefSeq Peptide - NP_071350
RefSeq Peptide - NP_001180243
RefSeq Peptide - NP_001180244
swissprot - G3V549
swissprot - Q9H9C1
swissprot - G3V4K3
swissprot - Q6IA61
Ensembl - ENSG00000151445
  
Related genetic diseases (OMIM): 613404 - Arthrogryposis, renal dysfunction, and cholestasis 2, 613404
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q5TYV4ENSDARG00000103690Danio rerio
 VIPAS39ENSGALG00000010459Gallus gallus
 Q8BGQ1ENSMUSG00000021038Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006925  Vps16, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006886 intracellular protein transport IMP
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0008333 endosome to lysosome transport IMP
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0017185 peptidyl-lysine hydroxylation IMP
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030199 collagen fibril organization IEA
 biological_processGO:0032963 collagen metabolic process IMP
 biological_processGO:0043687 post-translational protein modification IEA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005770 late endosome IEA
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0030897 HOPS complex IDA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0055037 recycling endosome IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000121 Nephrocalcinosis 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001339 Lissencephaly "A congenital absence of the convolutions of the cerebral cortex and a poorly formed sylvian fissure." [HPO:curators]
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 HP:0001385 Hip dysplasia 
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 HP:0001508 Failure to thrive 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001667 Right ventricular hypertrophy "In this case the right ventricle is more muscular than normal, causing a characteristic boot-shaped (coeur-en-sabot) appearance as seen on anterior- posterior chest x-rays. Right ventricular hypertrophy is commonly associated with any form of right ventricular outflow obstruction or pulmonary hypertension, which may in turn owe its origin to left-sided disease. The echocardiographic signs are thickening of the anterior right ventricular wall and the septum. Cavity size is usually normal, or slightly enlarged. In many cases there is associated volume overload present due to tricuspid regurgitation, in the absence of this, septal motion is normal. This feature can also be a component of the separat entity tetralogy of Fallot in which case it is generally agreed to be a secondary anomaly, as the level of hypertrophy generally increases with age." [HPO:curators]
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 HP:0001884 Talipes calcaneovalgus "Talipes calcaneovalgus is a flexible foot deformity (as opposed to a rigid congenital vertical talus foot deformity) that can either present as a positional or structural foot deformity depending on severity and/or causality. The axis of calcaneovalgus deformity is in the tibiotalar joint, where the foot is positioned in extreme hyperextension. On inspection, the foot has an "up and out" appearance, with the dorsal forefoot practically touching the anterior aspect of the ankle and lower leg." [HPO:curators]
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 HP:0001942 Metabolic acidosis 
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 HP:0001947 Renal tubular acidosis 
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 HP:0002611 Cholestatic liver disease 
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 HP:0002804 Arthrogryposis multiplex congenita 
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 HP:0002908 Conjugated hyperbilirubinemia 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0008064 Ichthyosiform abnormality of the skin 
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 HP:0009806 Nephrogenic diabetes insipidus "A form of diabetes insipidus caused by failure of the kidneys to respond to vasopressin (AVP)." [HPO:curators]
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 HP:0200084 Giant cell hepatitis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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