ENSDARG00000104030


Danio rerio

Features
Gene ID: ENSDARG00000104030
  
Biological name :taf12
  
Synonyms : taf12 / TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor
  
Possible biological names infered from orthology : Q16514 / Q8VE65 / TATA-box binding protein associated factor 12 / Transcription initiation factor TFIID subunit 12
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 35408856
Gene end: 35415077
  
Corresponding Affymetrix probe sets: Dr.17679.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000130095
Ensembl peptide - ENSDARP00000132266
Ensembl peptide - ENSDARP00000135237
NCBI entrez gene - 386637     See in Manteia.
RefSeq - NM_198368
RefSeq Peptide - NP_938182
swissprot - Q6P013
ZFIN ID - ZDB-GENE-031030-5
Ensembl - ENSDARG00000104030
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TAF12ENSGALG00000000991Gallus gallus
 TAF12ENSG00000120656Homo sapiens
 Taf12ENSMUSG00000028899Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003228  Transcription initiation factor TFIID subunit 12 domain
 IPR009072  Histone-fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006352 DNA-templated transcription, initiation IEA
 biological_processGO:0043966 histone H3 acetylation IBA
 biological_processGO:0051123 RNA polymerase II transcriptional preinitiation complex assembly IBA
 cellular_componentGO:0000124 SAGA complex IBA
 cellular_componentGO:0005669 transcription factor TFIID complex IBA
 cellular_componentGO:0046695 SLIK (SAGA-like) complex IEA
 molecular_functionGO:0001102 RNA polymerase II activating transcription factor binding IBA
 molecular_functionGO:0003677 DNA binding IBA
 molecular_functionGO:0004402 histone acetyltransferase activity IBA
 molecular_functionGO:0017025 TBP-class protein binding IBA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
Regulation of TP53 Activity through Phosphorylation
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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