ENSDARG00000104848


Danio rerio

Features
Gene ID: ENSDARG00000104848
  
Biological name :cdkal1
  
Synonyms : CDK5 regulatory subunit associated protein 1-like 1 / cdkal1
  
Possible biological names infered from orthology : Q5VV42 / Q91WE6 / Threonylcarbamoyladenosine tRNA methylthiotransferase
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 39498
Gene end: 53136
  
Corresponding Affymetrix probe sets: Dr.25794.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000133296
swissprot - A0A0G2KLR5
ZFIN ID - ZDB-GENE-040426-1443
Ensembl - ENSDARG00000104848
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CDKAL1ENSGALG00000012677Gallus gallus
 CDKAL1ENSG00000145996Homo sapiens
 Cdkal1ENSMUSG00000006191Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cdk5rap1 / CDK5 regulatory subunit associated protein 1 / Q8BTW8* / Q96SZ6*ENSDARG0000004492522
CABZ01090785.1 / CDKAL1* / Q5VV42* / CDK5 regulatory subunit associated protein 1 like 1*ENSDARG000001105720


Protein motifs (from Interpro)
Interpro ID Name
 IPR002792  TRAM domain
 IPR007197  Radical SAM
 IPR013785  Aldolase-type TIM barrel


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0035600 tRNA methylthiolation IEA
 cellular_componentGO:0005783 endoplasmic reticulum IBA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0035598 N6-threonylcarbomyladenosine methylthiotransferase activity IBA
 molecular_functionGO:0051536 iron-sulfur cluster binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism increased amount , abnormal
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 ZFA:0009102 pancreatic B cell pancreatic B cell decreased amount , abnormal
pancreatic B cell decreased area , abnormal
pancreatic B cell regeneration decreased rate , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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