ENSDARG00000044925


Danio rerio

Features
Gene ID: ENSDARG00000044925
  
Biological name :cdk5rap1
  
Synonyms : cdk5rap1 / CDK5 regulatory subunit associated protein 1
  
Possible biological names infered from orthology : Q8BTW8 / Q96SZ6
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 15480695
Gene end: 15587134
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000094886
NCBI entrez gene - 558659     See in Manteia.
RefSeq - NM_001110379
RefSeq Peptide - NP_001103849
swissprot - F1QMW8
ZFIN ID - ZDB-GENE-070424-90
Ensembl - ENSDARG00000044925
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CDK5RAP1ENSGALG00000006738Gallus gallus
 Q96SZ6ENSG00000101391Homo sapiens
 Q8BTW8ENSMUSG00000027487Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cdkal1 / CDK5 regulatory subunit associated protein 1-like 1 / Q5VV42*ENSDARG0000010484810
CABZ01090785.1 / CDKAL1* / Q5VV42* / CDK5 regulatory subunit associated protein 1 like 1*ENSDARG000001105724


Protein motifs (from Interpro)
Interpro ID Name
 IPR002792  TRAM domain
 IPR005839  Methylthiotransferase
 IPR006463  tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB
 IPR006638  Elp3/MiaB/NifB
 IPR007197  Radical SAM
 IPR013848  Methylthiotransferase, N-terminal
 IPR020612  Methylthiotransferase, conserved site
 IPR023404  Radical SAM, alpha/beta horseshoe


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006400 tRNA modification IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0051536 iron-sulfur cluster binding IEA
 molecular_functionGO:0051539 4 iron, 4 sulfur cluster binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr