ENSGALG00000006738


Gallus gallus

Features
Gene ID: ENSGALG00000006738
  
Biological name :CDK5RAP1
  
Synonyms : CDK5RAP1 / CDK5 regulatory subunit associated protein 1
  
Possible biological names infered from orthology : Q8BTW8 / Q96SZ6
  
Species: Gallus gallus
  
Chr. number: 20
Strand: -1
Band:
Gene start: 10535101
Gene end: 10540894
  
Corresponding Affymetrix probe sets: GgaAffx.20221.1.S1_at (Chicken Array)   GgaAffx.4190.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000010883
NCBI entrez gene - 419292     See in Manteia.
RefSeq - XM_015296591
RefSeq - XM_015296592
RefSeq - XM_417464
swissprot - F1NZV3
Ensembl - ENSGALG00000006738
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cdk5rap1ENSDARG00000044925Danio rerio
 Q96SZ6ENSG00000101391Homo sapiens
 Q8BTW8ENSMUSG00000027487Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CDKAL1 / CDK5 regulatory subunit associated protein 1 like 1 / Q5VV42* / Q91WE6* / Threonylcarbamoyladenosine tRNA methylthiotransferase *ENSGALG0000001267723


Protein motifs (from Interpro)
Interpro ID Name
 IPR002792  TRAM domain
 IPR005839  Methylthiotransferase
 IPR006463  tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB
 IPR006638  Elp3/MiaB/NifB
 IPR007197  Radical SAM
 IPR013848  Methylthiotransferase, N-terminal
 IPR020612  Methylthiotransferase, conserved site
 IPR023404  Radical SAM, alpha/beta horseshoe


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006400 tRNA modification IEA
 biological_processGO:0035600 tRNA methylthiolation IEA
 biological_processGO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity IEA
 biological_processGO:0045903 positive regulation of translational fidelity IEA
 biological_processGO:0070131 positive regulation of mitochondrial translation IEA
 biological_processGO:0070900 mitochondrial tRNA modification IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0035597 N6-isopentenyladenosine methylthiotransferase activity IEA
 molecular_functionGO:0051536 iron-sulfur cluster binding IEA
 molecular_functionGO:0051539 4 iron, 4 sulfur cluster binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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