ENSG00000000419


Homo sapiens

Features
Gene ID: ENSG00000000419
  
Biological name :DPM1
  
Synonyms : dolichyl-phosphate mannosyltransferase subunit 1, catalytic / DPM1 / O60762
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: -1
Band: q13.13
Gene start: 50934867
Gene end: 50958555
  
Corresponding Affymetrix probe sets: 202673_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000394921
Ensembl peptide - ENSP00000360638
Ensembl peptide - ENSP00000360640
Ensembl peptide - ENSP00000360644
NCBI entrez gene - 8813     See in Manteia.
OMIM - 603503
RefSeq - XM_011529093
RefSeq - NM_001317034
RefSeq - NM_001317035
RefSeq - NM_001317036
RefSeq - NM_003859
RefSeq Peptide - NP_001303963
RefSeq Peptide - NP_001303964
RefSeq Peptide - NP_001303965
RefSeq Peptide - NP_003850
swissprot - A0A0S2Z4Y5
swissprot - Q5QPK2
swissprot - H0Y368
swissprot - O60762
swissprot - Q5QPJ9
Ensembl - ENSG00000000419
  
Related genetic diseases (OMIM): 608799 - Congenital disorder of glycosylation, type Ie, 608799
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 dpm1ENSDARG00000057011Danio rerio
 DPM1ENSGALG00000017366Gallus gallus
 Dpm1ENSMUSG00000078919Mus musculus
 O70152ENSMUSG00000093752Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001173  Glycosyltransferase 2-like
 IPR029044  Nucleotide-diphospho-sugar transferases


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006486 protein glycosylation IEA
 biological_processGO:0006506 GPI anchor biosynthetic process IDA
 biological_processGO:0018279 protein N-linked glycosylation via asparagine TAS
 biological_processGO:0019348 dolichol metabolic process IEA
 biological_processGO:0019673 GDP-mannose metabolic process IEA
 biological_processGO:0035268 protein mannosylation IDA
 biological_processGO:0035269 protein O-linked mannosylation IDA
 biological_processGO:0097502 mannosylation IEA
 cellular_componentGO:0005634 nucleus HDA
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IDA
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0033185 dolichol-phosphate-mannose synthase complex IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity IDA
 molecular_functionGO:0004582 dolichyl-phosphate beta-D-mannosyltransferase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005537 mannose binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA
 molecular_functionGO:0043178 alcohol binding IEA


Pathways (from Reactome)
Pathway description
Synthesis of dolichyl-phosphate mannose
Defective DPM1 causes DPM1-CDG (CDG-1e)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000316 Hypertelorism 
Show

 HP:0000319 Flat philtrum 
Show

 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
Show

 HP:0000488 Retinopathy 
Show

 HP:0000494 Downward slanting palpebral fissures 
Show

 HP:0000504 Abnormality of vision "Abnormality of eyesight (visual perception)." [HPO:curators]
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000648 Optic atrophy 
Show

 HP:0001009 Telangiectasia "Telangiectasias refer to small dilated blood vessels located near the surface of the skin or mucous membranes, measuring between 0.5 and 1 millimeter in diameter." [HPO:curators]
Show

 HP:0001028 Hemangiomas "The presence of multiple hemangiomas. A hemangioma is a benign tumor characterized by blood-filled spaces lined by benign endothelial cells. A hemangioma characterized by large endothelial spaces (caverns) is called a cavernous hemangioma (in contrast to a hemangioma with small endothelial spaces, which is called capillary hemangioma)." [HPO:curators]
Show

 HP:0001103 Abnormality of the macula 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
Show

 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
Show

 HP:0001508 Failure to thrive 
Show

 HP:0001643 Patent ductus arteriosus 
Show

 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
Show

 HP:0001976 Antithrombin III deficiency 
Show

 HP:0002098 Respiratory distress 
Show

 HP:0002164 Nail dysplasia 
Show

 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
Show

 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
Show

 HP:0002395 Lower limb hyperreflexia 
Show

 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
Show

 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
Show

 HP:0003236 Elevated serum creatine phosphokinase 
Show

 HP:0003560 Muscular dystrophy "The term dystrophy means abnormal growth. However, muscular dystrophy is used to describe primary myopathies with a genetic basis and a progressive course characterized by progressive skeletal muscle weakness, defects in muscle proteins, and the apoptosis of muscle cells." [HPO:curators]
Show

 HP:0003593 Early onset 
Show

 HP:0003642 Abnormal isoelectric focusing of serum transferrin (type 1 pattern) 
Show

 HP:0003645 Prolonged partial thromboplastin time 
Show

 HP:0003676 Progressive disorder 
Show

 HP:0003828 Variable expressivity 
Show

 HP:0004279 Hypoplastic hand 
Show

 HP:0004855 protein S deficiency 
Show

 HP:0005280 Depressed nasal root and bridge 
Show

 HP:0005469 Occipital plagiocephaly "Occipital plagiocephaly can result from fusion or sclerosis of the lambdoid suture. If unilateral, this is accompanied by unilateral occipital flattening and bulging of the ispilateral frontal bone." [HPO:curators]
Show

 HP:0005484 Microcephaly, postnatal 
Show

 HP:0005543 Protein C deficiency 
Show

 HP:0006380 Knee flexion deformities 
Show

 HP:0006466 Contractures of the ankles 
Show

 HP:0006879 Pontocerebellar atrophy 
Show

 HP:0009824 Hypoplasia involving bones of the upper limbs 
Show

 HP:0011344 Severe global developmental delay "A severe delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
Show

 HP:0012385 Camptodactyly "The distal interphalangeal joint and/or the proximal interphalangeal joint of the fingers or toes cannot be extended to 180 degrees by either active or passive extension." [HPO:probinson]
Show

 HP:0100704 Cortical visual impairment "A form of loss of vision caused by damage to the visual cortex rather than a defect in the eye." [HPO:probinson]
Show

 HP:0200055 Small hands 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000136908 DPM2 / O94777 / dolichyl-phosphate mannosyltransferase subunit 2, regulatory  / complex
 ENSG00000179085 DPM3 / Q9P2X0 / dolichyl-phosphate mannosyltransferase subunit 3  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr