ENSG00000013573


Homo sapiens

Features
Gene ID: ENSG00000013573
  
Biological name :DDX11
  
Synonyms : DDX11 / DEAD/H-box helicase 11 / Q96FC9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: p11.21
Gene start: 31073845
Gene end: 31104791
  
Corresponding Affymetrix probe sets: 208149_x_at (Human Genome U133 Plus 2.0 Array)   208159_x_at (Human Genome U133 Plus 2.0 Array)   210206_s_at (Human Genome U133 Plus 2.0 Array)   213378_s_at (Human Genome U133 Plus 2.0 Array)   232816_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000445219
Ensembl peptide - ENSP00000443750
Ensembl peptide - ENSP00000445568
Ensembl peptide - ENSP00000473610
Ensembl peptide - ENSP00000228264
Ensembl peptide - ENSP00000309965
Ensembl peptide - ENSP00000406457
Ensembl peptide - ENSP00000406799
Ensembl peptide - ENSP00000407646
Ensembl peptide - ENSP00000439298
Ensembl peptide - ENSP00000440171
Ensembl peptide - ENSP00000440402
Ensembl peptide - ENSP00000441015
Ensembl peptide - ENSP00000441425
Ensembl peptide - ENSP00000442466
Ensembl peptide - ENSP00000443426
Ensembl peptide - ENSP00000443578
NCBI entrez gene - 1663     See in Manteia.
OMIM - 601150
RefSeq - XM_017018939
RefSeq - XM_017018921
RefSeq - XM_017018922
RefSeq - XM_017018923
RefSeq - XM_017018924
RefSeq - XM_017018925
RefSeq - XM_017018926
RefSeq - XM_017018927
RefSeq - XM_017018928
RefSeq - XM_017018929
RefSeq - XM_017018930
RefSeq - XM_017018931
RefSeq - XM_017018932
RefSeq - XM_017018933
RefSeq - XM_017018934
RefSeq - XM_017018935
RefSeq - XM_017018936
RefSeq - XM_017018937
RefSeq - XM_017018938
RefSeq - NM_001257144
RefSeq - NM_001257145
RefSeq - NM_004399
RefSeq - NM_030653
RefSeq - NM_152438
RefSeq - XM_005253331
RefSeq - XM_005253333
RefSeq - XM_006719050
RefSeq - XM_011520592
RefSeq - XM_011520595
RefSeq - XM_011520597
RefSeq - XM_017018918
RefSeq - XM_017018919
RefSeq - XM_017018920
RefSeq Peptide - NP_689651
RefSeq Peptide - NP_085911
RefSeq Peptide - NP_001244073
RefSeq Peptide - NP_001244074
RefSeq Peptide - NP_004390
swissprot - F5H2V9
swissprot - F6WZM0
swissprot - H0YFY8
swissprot - H0YGL4
swissprot - C9K0E8
swissprot - Q96FC9
swissprot - R4GNE1
swissprot - B4DMS8
swissprot - H0YGX9
swissprot - F5GXJ8
swissprot - F5GXL6
swissprot - F5GYY1
swissprot - F5H235
Ensembl - ENSG00000013573
  
Related genetic diseases (OMIM): 613398 - Warsaw breakage syndrome, 613398
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx11ENSDARG00000011072Danio rerio
 ENSGALG00000039636Gallus gallus
 Ddx11ENSMUSG00000035842Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
BRIP1 / Q9BX63 / BRCA1 interacting protein C-terminal helicase 1ENSG0000013649221
RTEL1 / Q9NZ71 / regulator of telomere elongation helicase 1ENSG0000025836620
RTEL1-TNFRSF6B / RTEL1-TNFRSF6B readthrough (NMD candidate)ENSG0000002603619


Protein motifs (from Interpro)
Interpro ID Name
 IPR006554  Helicase-like, DEXD box c2 type
 IPR006555  ATP-dependent helicase, C-terminal
 IPR010614  DEAD2
 IPR013020  ATP-dependent helicase Rad3/Chl1-like
 IPR014013  Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR028331  Probable ATP-dependent RNA helicase DDX11/DDX12


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006139 nucleobase-containing compound metabolic process IEA
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IMP
 biological_processGO:0007062 sister chromatid cohesion IDA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0016032 viral process IEA
 biological_processGO:0031297 replication fork processing IMP
 biological_processGO:0032079 positive regulation of endodeoxyribonuclease activity IDA
 biological_processGO:0032091 negative regulation of protein binding IMP
 biological_processGO:0032508 DNA duplex unwinding IEA
 biological_processGO:0035563 positive regulation of chromatin binding IDA
 biological_processGO:0036498 IRE1-mediated unfolded protein response TAS
 biological_processGO:0044806 G-quadruplex DNA unwinding IDA
 biological_processGO:0045876 positive regulation of sister chromatid cohesion IMP
 biological_processGO:0072711 cellular response to hydroxyurea IMP
 biological_processGO:0072719 cellular response to cisplatin IMP
 biological_processGO:1901838 positive regulation of transcription of nucleolar large rRNA by RNA polymerase I IMP
 biological_processGO:1904976 cellular response to bleomycin IMP
 biological_processGO:1990700 nucleolar chromatin organization IMP
 biological_processGO:2000781 positive regulation of double-strand break repair IMP
 cellular_componentGO:0000790 nuclear chromatin IDA
 cellular_componentGO:0000922 spindle pole IEA
 cellular_componentGO:0001650 fibrillar center IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0030496 midbody IEA
 cellular_componentGO:0031390 Ctf18 RFC-like complex IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IDA
 molecular_functionGO:0003682 chromatin binding IMP
 molecular_functionGO:0003688 DNA replication origin binding IMP
 molecular_functionGO:0003690 double-stranded DNA binding IDA
 molecular_functionGO:0003697 single-stranded DNA binding IDA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003727 single-stranded RNA binding IDA
 molecular_functionGO:0004003 ATP-dependent DNA helicase activity IEA
 molecular_functionGO:0004386 helicase activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008026 ATP-dependent helicase activity IEA
 molecular_functionGO:0008094 DNA-dependent ATPase activity IMP
 molecular_functionGO:0008186 RNA-dependent ATPase activity IDA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
 molecular_functionGO:0045142 triplex DNA binding IDA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051536 iron-sulfur cluster binding IEA
 molecular_functionGO:0051539 4 iron, 4 sulfur cluster binding IEA
 molecular_functionGO:0051880 G-quadruplex DNA binding IDA


Pathways (from Reactome)
Pathway description
XBP1(S) activates chaperone genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000274 Small face 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000378 Cup-shaped ears "Small auricles that grow forward over the meatus (ear canal)." [HPO:curators]
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 HP:0000588 Optic nerve coloboma 
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 HP:0000954 Transverse palmar creases "The presence of a single palmar crease (instead of the two palmar creases that are typically present)." [HPO:curators]
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 HP:0000965 Cutis marmorata 
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0004691 2-3 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes two and three." [HPO:sdoelken]
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 HP:0008586 Hypoplastic cochlea 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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