ENSG00000258366


Homo sapiens

Features
Gene ID: ENSG00000258366
  
Biological name :RTEL1
  
Synonyms : Q9NZ71 / regulator of telomere elongation helicase 1 / RTEL1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: 1
Band: q13.33
Gene start: 63657810
Gene end: 63696253
  
Corresponding Affymetrix probe sets: 206092_x_at (Human Genome U133 Plus 2.0 Array)   211526_s_at (Human Genome U133 Plus 2.0 Array)   213829_x_at (Human Genome U133 Plus 2.0 Array)   216325_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000457868
Ensembl peptide - ENSP00000496027
Ensembl peptide - ENSP00000494280
Ensembl peptide - ENSP00000322287
Ensembl peptide - ENSP00000349265
Ensembl peptide - ENSP00000353332
Ensembl peptide - ENSP00000359035
Ensembl peptide - ENSP00000388063
Ensembl peptide - ENSP00000424307
Ensembl peptide - ENSP00000425576
NCBI entrez gene - 51750     See in Manteia.
OMIM - 608833
RefSeq - NM_016434
RefSeq - NM_032957
RefSeq - NM_001283009
RefSeq - NM_001283010
RefSeq Peptide - NP_001269939
RefSeq Peptide - NP_116575
RefSeq Peptide - NP_001269938
RefSeq Peptide - NP_057518
swissprot - X6RBZ7
swissprot - F6WH68
swissprot - Q9NZ71
swissprot - X6R5I7
swissprot - A0A0C4DGC7
Ensembl - ENSG00000258366
  
Related genetic diseases (OMIM): 615190 - Dyskeratosis congenita, autosomal dominant 4, 615190
  616373 - Pulmonary fibrosis and/or bone marrow failure, telomere-related, 3, 616373
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rtel1ENSDARG00000035074Danio rerio
 ENSGALG00000006123Gallus gallus
 Rtel1ENSMUSG00000038685Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RTEL1-TNFRSF6B / RTEL1-TNFRSF6B readthrough (NMD candidate)ENSG0000002603656
BRIP1 / Q9BX63 / BRCA1 interacting protein C-terminal helicase 1ENSG0000013649223
DDX11 / Q96FC9 / DEAD/H-box helicase 11ENSG0000001357315


Protein motifs (from Interpro)
Interpro ID Name
 IPR006554  Helicase-like, DEXD box c2 type
 IPR006555  ATP-dependent helicase, C-terminal
 IPR006935  Helicase/UvrB, N-terminal
 IPR010614  DEAD2
 IPR013020  ATP-dependent helicase Rad3/Chl1-like
 IPR014013  Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR030845  Regulator of telomere elongation helicase 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000723 telomere maintenance IEA
 biological_processGO:0000732 strand displacement ISS
 biological_processGO:0006139 nucleobase-containing compound metabolic process IEA
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006310 DNA recombination IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0010569 regulation of double-strand break repair via homologous recombination IEA
 biological_processGO:0031297 replication fork processing ISS
 biological_processGO:0032206 positive regulation of telomere maintenance ISS
 biological_processGO:0032508 DNA duplex unwinding IEA
 biological_processGO:0043247 telomere maintenance in response to DNA damage ISS
 biological_processGO:0045910 negative regulation of DNA recombination ISS
 biological_processGO:0090657 telomeric loop disassembly ISS
 biological_processGO:1902990 mitotic telomere maintenance via semi-conservative replication ISS
 biological_processGO:1904355 positive regulation of telomere capping IMP
 biological_processGO:1904358 positive regulation of telomere maintenance via telomere lengthening IMP
 biological_processGO:1904430 negative regulation of t-circle formation TAS
 biological_processGO:1904506 negative regulation of telomere maintenance in response to DNA damage ISS
 biological_processGO:1904535 positive regulation of telomeric loop disassembly ISS
 cellular_componentGO:0000781 chromosome, telomeric region ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0004003 ATP-dependent DNA helicase activity IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008026 ATP-dependent helicase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051536 iron-sulfur cluster binding IEA
 molecular_functionGO:0051539 4 iron, 4 sulfur cluster binding IEA


Pathways (from Reactome)
Pathway description
Cytosolic iron-sulfur cluster assembly
Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000008 Abnormality of female internal genitalia 
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 HP:0000035 Abnormality of the testis 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000365 Hearing loss 
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 HP:0000498 Blepharitis "Inflammation of the eyelids." [HPO:curators]
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 HP:0000499 Abnormality of the eyelashes "An abnormality of the `eyelashes` (FMA:53669)." [HPO:probinson]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000534 Abnormality of the eyebrow "An abnormality of the `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000600 Abnormality of the pharynx 
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000670 Carious teeth 
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 HP:0000679 Taurodontia 
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 HP:0000704 Periodontal disease 
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 HP:0000819 Diabetes mellitus 
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0000982 Palmoplantar keratoderma 
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 HP:0001034 Hyperpigmented macules 
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 HP:0001053 Hypopigmented skin patches 
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001276 Hypertonia 
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001394 Cirrhosis 
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 HP:0001399 Hepatic failure 
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001873 Thrombocytopenia 
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 HP:0001874 Abnormality of neutrophil 
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 HP:0001881 Abnormality of leukocytes 
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 HP:0001882 Leukopenia 
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 HP:0001903 Anemia 
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 HP:0001928 Abnormality of coagulation 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002024 Malabsorption 
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 HP:0002110 Bronchiectasis 
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 HP:0002119 Ventriculomegaly 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002206 Pulmonary fibrosis 
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 HP:0002209 Sparse scalp hair "Sparseness of the `head hair` (FMA:54241)." [HPO:probinson]
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 HP:0002216 Premature graying of hair 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002514 Cerebral calcification "The presence of calcification within brain structures." [HPO:curators]
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 HP:0002575 Tracheoesophageal fistula "An abnormal connection (fistula) between the esophagus and the trachea." [HPO:curators]
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 HP:0002583 Severe colitis 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002664 Neoplasia "An organ or organ-system abnormality that consists of uncontrolled autonomous cell-proliferation which can occur in any part of the body as a benign or malignant tumour or neoplasm." [HPO:curators]
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 HP:0002665 Lymphoma "A cancer originating in lymphocytes and presenting as a solid tumor of lymhpoid cells." [HPO:curators]
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 HP:0002721 Immunodeficiency 
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 HP:0002745 Oral leukoplakia 
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0002875 Exertional dyspnea 
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 HP:0002894 Pancreatic cancer 
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 HP:0003581 Onset in adulthood 
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 HP:0003828 Variable expressivity 
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 HP:0003829 Incomplete penetrance 
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 HP:0004313 Reduced immunoglobulin levels 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004334 Dermal atrophy "Partial or complete wasting (atrophy) of the skin." [HPO:curators]
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 HP:0005374 Cellular immunodeficiency 
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 HP:0005528 Bone marrow hypoplasia 
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 HP:0007392 Excessive wrinkled skin 
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 HP:0007440 Generalized hyperpigmentation 
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 HP:0008065 Aplasia/Hypoplasia of the skin 
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 HP:0008066 Abnormal blistering of the skin 
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 HP:0008070 Sparse hair 
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 HP:0008404 Nail dystrophy, variable 
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 HP:0008661 Urethral stenosis 
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 HP:0008897 Growth retardation, progressive 
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 HP:0010444 Pulmonary insufficiency "The retrograde (backwards) flow of blood through the pulmonary valve into the right ventricle during diastole." [HPO:curators]
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 HP:0010450 Esophageal stenosis "An abnormal narrowing of the lumen of the esophagus." [HPO:curators]
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 HP:0010624 Aplastic/hypoplastic toenails 
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 HP:0010885 Aseptic necrosis "A disease where there is cellular death (necrosis) of bone components due to interruption of the blood supply." [HPO:sdoelken]
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 HP:0011358 Generalized hypopigmentation of hair "Reduced pigmentation of hair diffusely." [DDD:cmoss]
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 HP:0011364 White hair "Hypopigmented hair that appears white." [DDD:cmoss]
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 HP:0012732 Anorectal anomaly "An abnormality of the anus or rectum." [HPO:probinson]
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 HP:0012735 Cough "A sudden, audible expulsion of air from the lungs through a partially closed glottis, preceded by inhalation." [HPO:probinson]
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 HP:0025175 Honeycomb lung "Extensive interstitial fibrosis with alveolar disruption and bronchiolectasis." []
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 HP:0025179 Ground-glass opacification "A descriptive term that is applied to computer tomography imaging and that refers to a hazy area of increased attenuation in the lung with preserved bronchial and vascular markings." []
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 HP:0025390 Reticular pattern on pulmonary HRCT "On pulmonary high-resolution computed tomography, reticular pattern is characterised by innumerable interlacing shadows suggesting a mesh." [PMID:23247773]
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 HP:0030830 Rales "Abnormal breath sounds characterized by discontinuous clicking or rattling." [UToronto:chum]
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 HP:0100585 Teleangiectasia of the skin 
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 HP:0100627 Displacement of the external urethral meatus "A displacement of the external urethral orifice from its normal position (in males normally placed at the tip of glans penis, in females normally placed about 2.5 cm behind the glans clitoridis and immediately in front of that of the vagina)." [HPO:sdoelken]
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 HP:0100670 Rough bone trabeculation 
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 HP:0100759 Clubbing of fingers "Terminal broadening of the fingers (distal phalanges of the fingers)." [HPO:sdoelken]
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 HP:0200037 skin vesicle "A circumscribed, fluid-containing, epidermal elevation generally considered less than 10mm in diameter at the widest point." [HPO:SKOEHLER]
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000108384 O43502 / RAD51C / RAD51 paralog C  / reaction
 ENSG00000126215 XRCC3 / O43542 / X-ray repair cross complementing 3  / reaction






 

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