ENSG00000025708


Homo sapiens

Features
Gene ID: ENSG00000025708
  
Biological name :TYMP
  
Synonyms : P19971 / thymidine phosphorylase / TYMP
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: -1
Band: q13.33
Gene start: 50525752
Gene end: 50530056
  
Corresponding Affymetrix probe sets: 204858_s_at (Human Genome U133 Plus 2.0 Array)   217497_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000395875
Ensembl peptide - ENSP00000379036
Ensembl peptide - ENSP00000379037
Ensembl peptide - ENSP00000379038
Ensembl peptide - ENSP00000252029
NCBI entrez gene - 1890     See in Manteia.
OMIM - 131222
RefSeq - NM_001113756
RefSeq - NM_001113755
RefSeq - NM_001257988
RefSeq - NM_001257989
RefSeq - NM_001953
RefSeq Peptide - NP_001944
RefSeq Peptide - NP_001107228
RefSeq Peptide - NP_001244917
RefSeq Peptide - NP_001244918
RefSeq Peptide - NP_001107227
swissprot - P19971
swissprot - E5KRG5
swissprot - C9JGI3
Ensembl - ENSG00000025708
  
Related genetic diseases (OMIM): 603041 - Mitochondrial DNA depletion syndrome 1 (MNGIE type), 603041
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FQ377934.1ENSDARG00000099821Danio rerio
 TympENSMUSG00000022615Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000053  Thymidine/pyrimidine-nucleoside phosphorylase
 IPR000312  Glycosyl transferase, family 3
 IPR013102  Pyrimidine nucleoside phosphorylase, C-terminal
 IPR017459  Glycosyl transferase family 3, N-terminal domain
 IPR017872  Pyrimidine-nucleoside phosphorylase, conserved site
 IPR018090  Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic
 IPR035902  Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily
 IPR036320  Glycosyl transferase family 3, N-terminal domain superfamily
 IPR036566  Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000002 mitochondrial genome maintenance IMP
 biological_processGO:0001525 angiogenesis IEA
 biological_processGO:0006206 pyrimidine nucleobase metabolic process IEA
 biological_processGO:0006213 pyrimidine nucleoside metabolic process IEA
 biological_processGO:0006935 chemotaxis IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0010469 regulation of signaling receptor activity IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0031641 regulation of myelination IMP
 biological_processGO:0043097 pyrimidine nucleoside salvage TAS
 biological_processGO:0046135 pyrimidine nucleoside catabolic process TAS
 biological_processGO:0051969 regulation of transmission of nerve impulse IMP
 biological_processGO:1905333 regulation of gastric motility IMP
 cellular_componentGO:0005829 cytosol IBA
 molecular_functionGO:0004645 phosphorylase activity IEA
 molecular_functionGO:0008083 growth factor activity IEA
 molecular_functionGO:0009032 thymidine phosphorylase activity IMP
 molecular_functionGO:0016154 pyrimidine-nucleoside phosphorylase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA
 molecular_functionGO:0016763 transferase activity, transferring pentosyl groups IEA
 molecular_functionGO:0042803 protein homodimerization activity IDA


Pathways (from Reactome)
Pathway description
Pyrimidine salvage
Pyrimidine catabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000044 Hypogonadotrophic hypogonadism "Hypogonadotropic hypogonadism is characterized by reduced function of the gonads (testes in males or ovaries in females) and results from the absence of the gonadal stimulating pituitary hormones: follicle stimulating hormone (FSH) and luteinizing hormone (LH)." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000544 External ophthalmoplegia 
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 HP:0000590 External ophthalmoplegia, progressive (PEO) 
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 HP:0000726 Dementia 
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 HP:0000815 Hypergonadotropic hypogonadism "Reduced function of the gonads (testes in males or ovaries in females) associated with excess pituitary gonadotropin secretion and resulting in delayed sexual development and growth delay." [HPO:curators]
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 HP:0001155 Abnormality of the hand "An abnormality affecting one or both hands." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001284 Areflexia 
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 HP:0001394 Cirrhosis 
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 HP:0001403 Macrovesicular steatosis 
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 HP:0001903 Anemia 
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 HP:0002013 Vomiting 
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 HP:0002014 Diarrhea 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002018 Nausea 
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 HP:0002019 Constipation 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002024 Malabsorption 
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 HP:0002027 Abdominal pain 
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 HP:0002254 Intermittent diarrhea 
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 HP:0002352 Leukoencephalopathy 
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0002500 Abnormality of the cerebral white matter 
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 HP:0002578 Gastroparesis 
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 HP:0002579 Gastrointestinal dysmotility 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0002922 Increased CSF protein 
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 HP:0002936 Distal sensory impairment 
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003199 Decreased muscle mass 
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 HP:0003200 Ragged-red muscle fibers "An abnormal appearance of muscle fibers observed on muscle biopsy. Ragged red fibers can be visualized with Gomori trichrome (GT) staining as irregular and intensely red subsarcolemmal zones, whereas the normal myofibrils are green. The margins of affect fibers appear red and ragged." [HPO:curators]
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 HP:0003270 Abdominal distention "Enlargement or distention of the abdomen, which can be a secondary feature associated with a number of conditions such as bowel obstruction." [HPO:curators]
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 HP:0003348 Hyperalaninemia 
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 HP:0003387 Loss of large myelinated fibers 
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 HP:0003388 Easy fatigability 
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 HP:0003401 Paresthesia "Abnormal sensations such as tingling, pricking, or numbness of the skin with no apparent physical cause." [HPO:curators]
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 HP:0003431 Decreased motor nerve conduction velocity (NCV) 
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 HP:0003448 Decreased sensory nerve conduction velocities (NCV) 
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 HP:0003477 Axonal neuropathy 
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 HP:0003548 Electron microscopy shows subsarcolemmal accumulations of abnormally shaped mitochondria 
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 HP:0003676 Progressive disorder 
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 HP:0003688 Muscle biopsy shows decreased activity of cytochrome C oxidase 
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 HP:0003689 Muscle biopsy shows multiple mitochondrial DNA (mtDNA) deletions 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0003737 Mitochondrial myopathy 
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 HP:0004326 Cachexia 
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 HP:0004395 Malnutrition 
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 HP:0004396 Poor appetite 
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 HP:0007103 Hypodensity of cerebral white matter on MRI 
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 HP:0007108 Demyelinating peripheral neuropathy 
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 HP:0007141 Sensorimotor neuropathy 
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 HP:0008049 Abnormality of the extraocular muscles 
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 HP:0009027 Foot dorsiflexor weakness 
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 HP:0012103 Abnormality of the mitochondrion "An anomaly of the `mitochondrion` (FMA:63835), the membranous cytoplasmic organelle the interior of which is subdivided by cristae. The `mitochondrion` (GO:0005739) is a self replicating organelle that is the site of tissue respiration." [HPO:probinson]
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 HP:0012850 Small intestinal dysmotility "Abnormal small intestinal contractions, such as spasms and intestinal paralysis related to the loss of the ability of the gut to coordinate muscular activity because of endogenous or exogenous causes." [HPO:probinson]
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 HP:0025149 Atrophic muscularis propria "Partial or complete wasting (loss) of muscularois propria tissue that was once present. The atrophy may involve a marked vacuolar degeneration of myocytes, loss of muscle fibers and some cases a highly characteristic honeycomb fibrosis." [PMID:18329691]
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 HP:0025461 Abnormal cell morphology "Any anomaly of cell structure." []
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 HP:0100613 Death in early adulthood 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000025708 TYMP / P19971 / thymidine phosphorylase  / complex






 

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