ENSG00000032742


Homo sapiens

Features
Gene ID: ENSG00000032742
  
Biological name :IFT88
  
Synonyms : IFT88 / intraflagellar transport 88 / Q13099
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 13
Strand: 1
Band: q12.11
Gene start: 20567069
Gene end: 20691437
  
Corresponding Affymetrix probe sets: 204703_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000437719
Ensembl peptide - ENSP00000261632
Ensembl peptide - ENSP00000323580
Ensembl peptide - ENSP00000374024
NCBI entrez gene - 8100     See in Manteia.
OMIM - 600595
RefSeq - XM_017020775
RefSeq - XM_017020763
RefSeq - XM_017020764
RefSeq - XM_017020765
RefSeq - XM_017020766
RefSeq - XM_017020767
RefSeq - XM_017020768
RefSeq - XM_017020769
RefSeq - XM_017020770
RefSeq - XM_017020771
RefSeq - XM_017020772
RefSeq - XM_017020773
RefSeq - XM_017020774
RefSeq - NM_001318491
RefSeq - NM_001318493
RefSeq - NM_001353566
RefSeq - NM_006531
RefSeq - NM_175605
RefSeq - XM_005266553
RefSeq - XM_006719870
RefSeq - XM_011535241
RefSeq - XM_011535242
RefSeq - XM_011535243
RefSeq - XM_017020757
RefSeq - XM_017020758
RefSeq - XM_017020759
RefSeq - XM_017020760
RefSeq - XM_017020761
RefSeq - XM_017020762
RefSeq Peptide - NP_001305422
RefSeq Peptide - NP_001340494
RefSeq Peptide - NP_001340495
RefSeq Peptide - NP_001340496
RefSeq Peptide - NP_783195
RefSeq Peptide - NP_001340497
RefSeq Peptide - NP_006522
RefSeq Peptide - NP_001305420
swissprot - A0A140VJL7
swissprot - F6SRW8
swissprot - Q13099
swissprot - F5H6C2
Ensembl - ENSG00000032742
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ift88ENSDARG00000027234Danio rerio
 ENSGALG00000017134Gallus gallus
 ENSGALG00000043412Gallus gallus
 Ift88ENSMUSG00000040040Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001440  Tetratricopeptide repeat 1
 IPR006597  Sel1-like repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR019734  Tetratricopeptide repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0035735 intraciliary transport involved in cilium assembly TAS
 biological_processGO:0060271 cilium assembly ISS
 biological_processGO:1902017 regulation of cilium assembly ISS
 biological_processGO:2000785 regulation of autophagosome assembly ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005814 centriole ISS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005929 cilium TAS
 cellular_componentGO:0030992 intraciliary transport particle B ISS
 cellular_componentGO:0031514 motile cilium ISS
 cellular_componentGO:0036064 ciliary basal body ISS
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0097542 ciliary tip TAS
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Hedgehog off state
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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