ENSG00000042781


Homo sapiens

Features
Gene ID: ENSG00000042781
  
Biological name :USH2A
  
Synonyms : O75445 / USH2A / usherin
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: q41
Gene start: 215622894
Gene end: 216423396
  
Corresponding Affymetrix probe sets: 207706_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000305941
Ensembl peptide - ENSP00000355909
NCBI entrez gene - 7399     See in Manteia.
OMIM - 608400
RefSeq - NM_007123
RefSeq - NM_206933
RefSeq Peptide - NP_009054
RefSeq Peptide - NP_996816
swissprot - O75445
Ensembl - ENSG00000042781
  
Related genetic diseases (OMIM): 276901 - Usher syndrome, type 2A, 276901
  613809 - Retinitis pigmentosa 39, 613809
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ush2aENSDARG00000029482Danio rerio
 ENSGALG00000045563Gallus gallus
 ENSGALG00000009652Gallus gallus
 ENSGALG00000044419Gallus gallus
 Ush2aENSMUSG00000026609Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MEGF9 / Q9H1U4 / multiple EGF like domains 9ENSG000001067804
NTN3 / O00634 / netrin 3ENSG000001620683
NTN1 / O95631 / netrin 1ENSG000000653203
NTNG1 / Q9Y2I2 / netrin G1ENSG000001626312
NTN5 / Q8WTR8 / netrin 5ENSG000001422332
NTNG2 / Q96CW9 / netrin G2ENSG000001963582


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR002049  Laminin EGF domain
 IPR003961  Fibronectin type III
 IPR006558  LamG-like jellyroll fold
 IPR008211  Laminin, N-terminal
 IPR008979  Galactose-binding-like domain superfamily
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR013783  Immunoglobulin-like fold
 IPR026915  Usherin
 IPR036116  Fibronectin type III superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007605 sensory perception of sound IMP
 biological_processGO:0035315 hair cell differentiation IEA
 biological_processGO:0045184 establishment of protein localization IEA
 biological_processGO:0045494 photoreceptor cell maintenance IMP
 biological_processGO:0048496 maintenance of animal organ identity IMP
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0050953 sensory perception of light stimulus IMP
 biological_processGO:0060113 inner ear receptor cell differentiation IEA
 cellular_componentGO:0001917 photoreceptor inner segment IEA
 cellular_componentGO:0002141 stereocilia ankle link IEA
 cellular_componentGO:0002142 stereocilia ankle link complex IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005604 basement membrane IDA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016324 apical plasma membrane IEA
 cellular_componentGO:0032391 photoreceptor connecting cilium IEA
 cellular_componentGO:0032421 stereocilium bundle IEA
 cellular_componentGO:0036064 ciliary basal body IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0060171 stereocilium membrane ISS
 cellular_componentGO:1990075 periciliary membrane compartment IEA
 cellular_componentGO:1990696 USH2 complex IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005518 collagen binding IDA
 molecular_functionGO:0017022 myosin binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000545 Myopia 
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000572 Visual loss 
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 HP:0000575 Scotoma "Scotoma refers to an area or island of loss or impairment of visual acuity surrounded by a field of normal or relatively well-preserved vision." [HPO:curators]
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 HP:0000602 Ophthalmoplegia 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000662 Night blindness 
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 HP:0000670 Carious teeth 
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 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
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 HP:0000691 Microdontia 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000738 Hallucinations 
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 HP:0000739 Anxiety 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000987 Scarring 
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 HP:0001123 Visual field defects 
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
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 HP:0007675 Progressive night blindness 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007730 Reduced iris pigmentation 
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 HP:0007737 Bony spicule pigmentary retinopathy 
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 HP:0007843 Attenuation of retinal blood vessels 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008527 Congenital sensorineural hearing loss 
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 HP:0008736 Hypoplasia of penis 
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 HP:0011073 Abnormality of dental color "A developmental defect of tooth color." [HPO:ibailleulforestier]
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 HP:0012157 Subcortical cerebral atrophy "Atrophy of the cerebral subcortical white and gray matter, termed subcortical atrophy, reflects loss of nerve cells in the basal ganglia or fibers in the deep white matter." [HPO:probinson, pmid:20813998]
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 HP:0012377 Hemianopsia "Partial or complete loss of vision in one half of the visual field of one or both eyes." [HPO:probinson]
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 HP:0100753 Schizophrenia "A mental disorder characterized by a disintegration of thought processes and of emotional responsiveness. It most commonly manifests as auditory hallucinations, paranoid or bizarre delusions, or disorganized speech and thinking, and it is accompanied by significant social or occupational dysfunction. The onset of symptoms typically occurs in young adulthood, with a global lifetime prevalence of about 0.3-0.7%." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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