ENSG00000054983


Homo sapiens

Features
Gene ID: ENSG00000054983
  
Biological name :GALC
  
Synonyms : galactosylceramidase / GALC / P54803
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: -1
Band: q31.3
Gene start: 87837820
Gene end: 87993665
  
Corresponding Affymetrix probe sets: 204417_at (Human Genome U133 Plus 2.0 Array)   211810_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000451884
Ensembl peptide - ENSP00000480649
Ensembl peptide - ENSP00000452314
Ensembl peptide - ENSP00000452208
Ensembl peptide - ENSP00000261304
Ensembl peptide - ENSP00000377198
Ensembl peptide - ENSP00000377199
Ensembl peptide - ENSP00000437513
Ensembl peptide - ENSP00000450472
Ensembl peptide - ENSP00000451480
NCBI entrez gene - 2581     See in Manteia.
OMIM - 606890
RefSeq - XM_011536618
RefSeq - NM_000153
RefSeq - NM_001201401
RefSeq - NM_001201402
RefSeq Peptide - NP_001188331
RefSeq Peptide - NP_000144
RefSeq Peptide - NP_001188330
swissprot - P54803
swissprot - A0A0A0MQV0
swissprot - A0A087WX10
swissprot - G3V255
swissprot - G3V5E8
swissprot - G3V4M2
swissprot - H0YJG8
swissprot - H0YJV6
Ensembl - ENSG00000054983
  
Related genetic diseases (OMIM): 245200 - Krabbe disease, 245200
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 galcaENSDARG00000037064Danio rerio
 galcbENSDARG00000016474Danio rerio
 GALCENSGALG00000010593Gallus gallus
 GalcENSMUSG00000021003Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001286  Glycoside hydrolase, family 59
 IPR017853  Glycoside hydrolase superfamily
 IPR035394  Glycosyl hydrolase family 59, central domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006665 sphingolipid metabolic process IEA
 biological_processGO:0006683 galactosylceramide catabolic process ISS
 biological_processGO:0006687 glycosphingolipid metabolic process TAS
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0016042 lipid catabolic process IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005764 lysosome TAS
 cellular_componentGO:0043202 lysosomal lumen TAS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004336 galactosylceramidase activity TAS
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016798 hydrolase activity, acting on glycosyl bonds IEA


Pathways (from Reactome)
Pathway description
Glycosphingolipid metabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000238 Hydrocephalus 
Show

 HP:0000365 Hearing loss 
Show

 HP:0000618 Blindness 
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000648 Optic atrophy 
Show

 HP:0000762 Decreased nerve conduction velocities 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
Show

 HP:0001276 Hypertonia 
Show

 HP:0001508 Failure to thrive 
Show

 HP:0001954 Fever, episodic "Periodic (episodic or recurrent) bouts of fever that do not have an infectious cause." [HPO:curators]
Show

 HP:0001973 Immune thrombocytopenia 
Show

 HP:0002013 Vomiting 
Show

 HP:0002180 Neurodegeneration 
Show

 HP:0002191 Spasticity, progressive 
Show

 HP:0002333 Motor deterioration 
Show

 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
Show

 HP:0002376 Developmental regression 
Show

 HP:0002506 Diffuse cerebral atrophy 
Show

 HP:0002922 Increased CSF protein 
Show

 HP:0006801 Hyperactive deep tendon reflexes 
Show

 HP:0007141 Sensorimotor neuropathy 
Show

 HP:0007305 Cns demyelination 
Show

 HP:0007928 Abnormal flash visual evoked potentials 
Show

 HP:0011096 Peripheral demyelination "A loss of myelin from the internode regions along myelinated nerve fibers of the peripheral nervous system." [HPO:probinson]
Show

 HP:0025013 Decerebrate rigidity "A type of rigidity that is manifested by an exaggerated extensor posture of all extremities." [UToronto:chum]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr