ENSG00000072864


Homo sapiens

Features
Gene ID: ENSG00000072864
  
Biological name :NDE1
  
Synonyms : NDE1 / nudE neurodevelopment protein 1 / Q9NXR1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: p13.11
Gene start: 15643267
Gene end: 15726353
  
Corresponding Affymetrix probe sets: 218414_s_at (Human Genome U133 Plus 2.0 Array)   222625_s_at (Human Genome U133 Plus 2.0 Array)   227843_at (Human Genome U133 Plus 2.0 Array)   230219_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000461748
Ensembl peptide - ENSP00000460996
Ensembl peptide - ENSP00000461729
Ensembl peptide - ENSP00000379642
Ensembl peptide - ENSP00000379643
Ensembl peptide - ENSP00000459863
Ensembl peptide - ENSP00000459875
Ensembl peptide - ENSP00000459889
Ensembl peptide - ENSP00000459918
Ensembl peptide - ENSP00000460436
NCBI entrez gene - 54820     See in Manteia.
OMIM - 609449
RefSeq - XM_017023357
RefSeq - XM_005255396
RefSeq - XM_006720897
RefSeq - XM_006720900
RefSeq - XM_011522553
RefSeq - XM_017023349
RefSeq - XM_017023350
RefSeq - XM_017023351
RefSeq - XM_017023352
RefSeq - XM_017023353
RefSeq - XM_017023354
RefSeq - XM_017023355
RefSeq - XM_017023356
RefSeq - NM_001143979
RefSeq - NM_017668
RefSeq Peptide - NP_060138
RefSeq Peptide - NP_001137451
swissprot - I3L2T8
swissprot - I3L3G9
swissprot - I3L464
swissprot - I3L522
swissprot - I3L533
swissprot - X5DR54
swissprot - I3L2R3
swissprot - I3L2R9
swissprot - Q9NXR1
swissprot - I3L2S8
Ensembl - ENSG00000072864
  
Related genetic diseases (OMIM): 605013 - ?Microhydranencephaly, 605013
  614019 - Lissencephaly 4 (with microcephaly), 614019
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nde1ENSDARG00000103902Danio rerio
 NDE1ENSGALG00000032590Gallus gallus
 Nde1ENSMUSG00000022678Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NDEL1 / Q9GZM8 / nudE neurodevelopment protein 1 like 1ENSG0000016657955


Protein motifs (from Interpro)
Interpro ID Name
 IPR006964  NUDE domain
 IPR033494  NUDE family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000086 G2/M transition of mitotic cell cycle TAS
 biological_processGO:0000132 establishment of mitotic spindle orientation IMP
 biological_processGO:0001764 neuron migration IEA
 biological_processGO:0007020 microtubule nucleation IBA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007059 chromosome segregation IBA
 biological_processGO:0007062 sister chromatid cohesion TAS
 biological_processGO:0007100 mitotic centrosome separation IBA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007405 neuroblast proliferation IEA
 biological_processGO:0010389 regulation of G2/M transition of mitotic cell cycle TAS
 biological_processGO:0016477 cell migration IBA
 biological_processGO:0021987 cerebral cortex development IMP
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030900 forebrain development IEA
 biological_processGO:0031023 microtubule organizing center organization IEA
 biological_processGO:0047496 vesicle transport along microtubule IBA
 biological_processGO:0051298 centrosome duplication ISS
 biological_processGO:0051301 cell division IEA
 biological_processGO:0051303 establishment of chromosome localization IMP
 biological_processGO:0051642 centrosome localization IBA
 biological_processGO:0097711 ciliary basal body-plasma membrane docking TAS
 biological_processGO:2000574 regulation of microtubule motor activity IEA
 cellular_componentGO:0000775 chromosome, centromeric region IEA
 cellular_componentGO:0000776 kinetochore IEA
 cellular_componentGO:0000777 condensed chromosome kinetochore IEA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005819 spindle IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005871 kinesin complex IBA
 cellular_componentGO:0005874 microtubule IEA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0031616 spindle pole centrosome ISS
 cellular_componentGO:0032154 cleavage furrow IEA
 cellular_componentGO:0045202 synapse IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008017 microtubule binding IBA
 molecular_functionGO:0019904 protein domain specific binding IEA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal
Separation of Sister Chromatids
Resolution of Sister Chromatid Cohesion
Regulation of PLK1 Activity at G2/M Transition
Loss of Nlp from mitotic centrosomes
Recruitment of mitotic centrosome proteins and complexes
Loss of proteins required for interphase microtubule organization from the centrosome
Recruitment of NuMA to mitotic centrosomes
Anchoring of the basal body to the plasma membrane
RHO GTPases Activate Formins
Mitotic Prometaphase
AURKA Activation by TPX2


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000426 Prominent nasal bridge 
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 HP:0000520 Proptosis 
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 HP:0000742 Self-mutilation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001302 Pachygyria "A congenital abnormality of the cerebral hemisphere chacterized by unusually thick gyrations (convolutions) of the cerebral cortex." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001339 Lissencephaly "A congenital absence of the convolutions of the cerebral cortex and a poorly formed sylvian fissure." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002123 Myoclonic seizures "Myoclonic seizures are sudden, brief losses of consciousness and postural tone not associated with tonic muscular contractions. Myoclonic seizures may involve one body part or the entire body. In the latter case, the myoclonic seizure is accompanied by a violent fall but not by loss of consciousness." [HPO:curators]
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 HP:0002187 Mental retardation, profound "Severe mental retardation is defined as an intelligence quotient (IQ) below 20." [HPO:curators]
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 HP:0002305 Athetosis "Athetosis (from the Greek word for changeable or unfixed ) refers to an inability to sustain the muscles of the fingers, toes, tongue, or any other group of muscles in a fixed position. Instead, posture is interrupted by slow, purposeless involuntary movements." [HPO:curators]
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 HP:0002324 Hydranencephaly 
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 HP:0002365 Hypoplasia of the brainstem 
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 HP:0002510 Spastic tetraplegia "Spastic paralysis affecting all four limbs." [HPO:curators]
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 HP:0002828 Multiple joint contractures 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003577 Onset at birth 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0006887 Mental retardation, progressive "Mental retardation is defined as a decreased intelligence quotient of varying degree. The term progressive mental retardation should be used if intelligence decreases/deteriorates over time." [HPO:curators]
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 HP:0009879 Cortical gyral simplification "An abnormal reduction of the number and complexity of the pattern of gyrations of the cerebral cortex." [HPO:curators]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0012736 Profound global developmental delay "A profound delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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