ENSG00000076685


Homo sapiens

Features
Gene ID: ENSG00000076685
  
Biological name :NT5C2
  
Synonyms : 5-nucleotidase, cytosolic II / NT5C2 / P49902
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: -1
Band: q24.33
Gene start: 103088017
Gene end: 103193306
  
Corresponding Affymetrix probe sets: 209155_s_at (Human Genome U133 Plus 2.0 Array)   236703_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000474247
Ensembl peptide - ENSP00000447664
Ensembl peptide - ENSP00000474091
Ensembl peptide - ENSP00000339479
Ensembl peptide - ENSP00000383960
Ensembl peptide - ENSP00000396468
Ensembl peptide - ENSP00000408112
Ensembl peptide - ENSP00000411330
NCBI entrez gene - 22978     See in Manteia.
OMIM - 600417
RefSeq - XM_017015976
RefSeq - NM_001134373
RefSeq - NM_001351169
RefSeq - NM_001351176
RefSeq - NM_001351177
RefSeq - NM_001351183
RefSeq - NM_012229
RefSeq - XM_017015963
RefSeq - XM_017015964
RefSeq - XM_017015965
RefSeq - XM_017015966
RefSeq - XM_017015967
RefSeq - XM_017015968
RefSeq - XM_017015969
RefSeq - XM_017015970
RefSeq - XM_017015971
RefSeq - XM_017015972
RefSeq - XM_017015973
RefSeq - XM_017015974
RefSeq - XM_017015975
RefSeq - XM_005269632
RefSeq - XM_005269633
RefSeq - XM_005269634
RefSeq - XM_005269635
RefSeq - XM_005269636
RefSeq - XM_005269637
RefSeq - XM_005269638
RefSeq - XM_005269639
RefSeq - XM_005269640
RefSeq - XM_005269641
RefSeq - XM_005269642
RefSeq - XM_005269643
RefSeq - XM_005269644
RefSeq - XM_005269645
RefSeq - XM_005269646
RefSeq - XM_006717721
RefSeq - XM_006717723
RefSeq - XM_011539537
RefSeq - XM_017015947
RefSeq - XM_017015948
RefSeq - XM_017015949
RefSeq - XM_017015950
RefSeq - XM_017015951
RefSeq - XM_017015952
RefSeq - XM_017015953
RefSeq - XM_017015954
RefSeq - XM_017015955
RefSeq - XM_017015956
RefSeq - XM_017015957
RefSeq - XM_017015958
RefSeq - XM_017015959
RefSeq - XM_017015960
RefSeq - XM_017015961
RefSeq - XM_017015962
RefSeq Peptide - NP_001127845
RefSeq Peptide - NP_001338098
RefSeq Peptide - NP_001338105
RefSeq Peptide - NP_001338106
RefSeq Peptide - NP_001338112
RefSeq Peptide - NP_036361
swissprot - P49902
swissprot - Q5JUV3
swissprot - Q5JUV4
swissprot - Q5JUV6
swissprot - S4R3A6
swissprot - S4R3E7
swissprot - H0YHR8
Ensembl - ENSG00000076685
  
Related genetic diseases (OMIM): 613162 - Spastic paraplegia 45, autosomal recessive, 613162
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nt5c2aENSDARG00000039399Danio rerio
 nt5c2bENSDARG00000058231Danio rerio
 NT5C2ENSGALG00000008179Gallus gallus
 Nt5c2ENSMUSG00000025041Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NT5DC4 / Q86YG4 / 5-nucleotidase domain containing 4ENSG0000014413048
NT5DC2 / Q9H857 / 5-nucleotidase domain containing 2ENSG0000016826824
NT5DC3 / Q86UY8 / 5-nucleotidase domain containing 3ENSG0000011169624
NT5DC1 / Q5TFE4 / 5-nucleotidase domain containing 1ENSG0000017842517


Protein motifs (from Interpro)
Interpro ID Name
 IPR008380  HAD-superfamily hydrolase, subfamily IG, 5"-nucleotidase
 IPR016695  Purine 5"-nucleotidase
 IPR023214  HAD superfamily
 IPR036412  HAD-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006195 purine nucleotide catabolic process TAS
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0009117 nucleotide metabolic process IEA
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0016311 dephosphorylation IEA
 biological_processGO:0017144 drug metabolic process TAS
 biological_processGO:0046040 IMP metabolic process IEA
 biological_processGO:0046085 adenosine metabolic process IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008253 5"-nucleotidase activity IBA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0050146 nucleoside phosphotransferase activity TAS


Pathways (from Reactome)
Pathway description
Abacavir metabolism
Purine catabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000545 Myopia 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0001249 Mental retardation 
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 HP:0001258 Spastic paraplegia 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0002064 Spastic gait 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0005830 Partial flexion contractures of fingers and toes 
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 HP:0006380 Knee flexion deformities 
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 HP:0006466 Contractures of the ankles 
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 HP:0006989 Dysplastic corpus callosum 
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 HP:0012043 Pendular nystagmus "Rhythmic, involuntary sinusoidal oscillations of one or both eyes. The waveform of pendular nystagmus may occur in any direction." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000076685 NT5C2 / P49902 / 5-nucleotidase, cytosolic II  / complex






 

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