ENSG00000077935


Homo sapiens

Features
Gene ID: ENSG00000077935
  
Biological name :SMC1B
  
Synonyms : Q8NDV3 / SMC1B / structural maintenance of chromosomes 1B
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: -1
Band: q13.31
Gene start: 45344063
Gene end: 45413619
  
Corresponding Affymetrix probe sets: 1553249_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000350036
Ensembl peptide - ENSP00000385902
NCBI entrez gene - 27127     See in Manteia.
OMIM - 608685
RefSeq - XM_011530145
RefSeq - NM_001291501
RefSeq - NM_148674
RefSeq - XM_011530144
RefSeq Peptide - NP_001278430
RefSeq Peptide - NP_683515
swissprot - Q8NDV3
Ensembl - ENSG00000077935
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smc1bENSDARG00000014402Danio rerio
 SMC1BENSGALG00000014228Gallus gallus
 Smc1bENSMUSG00000022432Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SMC1A / Q14683 / structural maintenance of chromosomes 1AENSG0000007250153


Protein motifs (from Interpro)
Interpro ID Name
 IPR003395  RecF/RecN/SMC, N-terminal
 IPR010935  SMCs flexible hinge
 IPR024704  Structural maintenance of chromosomes protein
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR036277  SMCs flexible hinge superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007062 sister chromatid cohesion IEA
 biological_processGO:0051276 chromosome organization IEA
 biological_processGO:0051321 meiotic cell cycle IEA
 cellular_componentGO:0000775 chromosome, centromeric region IEA
 cellular_componentGO:0000794 condensed nuclear chromosome IEA
 cellular_componentGO:0000795 synaptonemal complex IEA
 cellular_componentGO:0000800 lateral element IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0030893 meiotic cohesin complex IDA
 cellular_componentGO:0034991 nuclear meiotic cohesin complex IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
Meiotic synapsis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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