ENSGALG00000014228


Gallus gallus

Features
Gene ID: ENSGALG00000014228
  
Biological name :SMC1B
  
Synonyms : SMC1B / structural maintenance of chromosomes 1B
  
Possible biological names infered from orthology : Q8NDV3 / Q920F6
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 70455565
Gene end: 70491589
  
Corresponding Affymetrix probe sets: Gga.17853.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000022964
NCBI entrez gene - 418243     See in Manteia.
RefSeq - XM_416467
swissprot - F1NX72
Ensembl - ENSGALG00000014228
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smc1bENSDARG00000014402Danio rerio
 SMC1BENSG00000077935Homo sapiens
 Smc1bENSMUSG00000022432Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003395  RecF/RecN/SMC, N-terminal
 IPR010935  SMCs flexible hinge
 IPR024704  Structural maintenance of chromosomes protein
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007062 sister chromatid cohesion IEA
 biological_processGO:0051276 chromosome organization IEA
 biological_processGO:0051321 meiotic cell cycle IEA
 cellular_componentGO:0000775 chromosome, centromeric region IEA
 cellular_componentGO:0000794 condensed nuclear chromosome IEA
 cellular_componentGO:0000795 synaptonemal complex IEA
 cellular_componentGO:0000800 lateral element IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0030893 meiotic cohesin complex IEA
 cellular_componentGO:0034991 nuclear meiotic cohesin complex IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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