ENSG00000083896


Homo sapiens

Features
Gene ID: ENSG00000083896
  
Biological name :YTHDC1
  
Synonyms : Q96MU7 / YTHDC1 / YTH domain containing 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: -1
Band: q13.2
Gene start: 68310387
Gene end: 68350089
  
Corresponding Affymetrix probe sets: 212455_at (Human Genome U133 Plus 2.0 Array)   214814_at (Human Genome U133 Plus 2.0 Array)   228556_at (Human Genome U133 Plus 2.0 Array)   239905_at (Human Genome U133 Plus 2.0 Array)   240459_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000463982
Ensembl peptide - ENSP00000462186
Ensembl peptide - ENSP00000462238
Ensembl peptide - ENSP00000339245
Ensembl peptide - ENSP00000347888
Ensembl peptide - ENSP00000461990
NCBI entrez gene - 91746     See in Manteia.
OMIM - 617283
RefSeq - XM_017008833
RefSeq - NM_001031732
RefSeq - NM_133370
RefSeq - XM_005265706
RefSeq - XM_005265707
RefSeq - XM_005265708
RefSeq - XM_017008832
RefSeq Peptide - NP_001317627
RefSeq Peptide - NP_588611
RefSeq Peptide - NP_001026902
swissprot - J3KS01
swissprot - J3QR07
swissprot - Q96MU7
swissprot - J3KRG5
swissprot - J3KRW0
Ensembl - ENSG00000083896
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ythdc1ENSDARG00000051953Danio rerio
 YTHDC1ENSGALG00000035906Gallus gallus
 E9Q5K9ENSMUSG00000035851Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007275  YTH domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006376 mRNA splice site selection IDA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0010608 posttranscriptional regulation of gene expression IEA
 biological_processGO:0048024 regulation of mRNA splicing, via spliceosome IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0016604 nuclear body IEA
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:1990247 N6-methyladenosine-containing RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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