ENSMUSG00000035851


Mus musculus

Features
Gene ID: ENSMUSG00000035851
  
Biological name :Ythdc1
  
Synonyms : E9Q5K9 / Ythdc1 / YTH domain containing 1
  
Possible biological names infered from orthology : Q96MU7
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: E1
Gene start: 86804221
Gene end: 86836659
  
Corresponding Affymetrix probe sets: 10522802 (MoGene1.0st)   1426827_at (Mouse Genome 430 2.0 Array)   1456699_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000122491
Ensembl peptide - ENSMUSP00000039133
Ensembl peptide - ENSMUSP00000113000
Ensembl peptide - ENSMUSP00000113951
NCBI entrez gene - 231386     See in Manteia.
MGI - MGI:2443713
RefSeq - XM_017320844
RefSeq - XM_006534865
RefSeq - XM_006534866
RefSeq - XM_006534867
RefSeq - XM_017320842
RefSeq - XM_017320843
RefSeq - NM_001347375
RefSeq - NM_001347376
RefSeq - NM_177680
RefSeq - XM_006534863
RefSeq - XM_006534864
RefSeq Peptide - NP_001334305
RefSeq Peptide - NP_808348
RefSeq Peptide - NP_001334304
swissprot - E9Q5K9
swissprot - D6RG95
Ensembl - ENSMUSG00000035851
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ythdc1ENSDARG00000051953Danio rerio
 YTHDC1ENSGALG00000035906Gallus gallus
 Q96MU7ENSG00000083896Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007275  YTH domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006376 mRNA splice site selection ISO
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0010608 posttranscriptional regulation of gene expression IMP
 biological_processGO:0048024 regulation of mRNA splicing, via spliceosome ISO
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016604 nuclear body IEA
 cellular_componentGO:0016607 nuclear speck ISO
 molecular_functionGO:0003723 RNA binding ISO
 molecular_functionGO:1990247 N6-methyladenosine-containing RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr