ENSG00000088836


Homo sapiens

Features
Gene ID: ENSG00000088836
  
Biological name :SLC4A11
  
Synonyms : Q8NBS3 / SLC4A11 / solute carrier family 4 member 11
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: -1
Band: p13
Gene start: 3227417
Gene end: 3239559
  
Corresponding Affymetrix probe sets: 223748_at (Human Genome U133 Plus 2.0 Array)   233550_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000496214
Ensembl peptide - ENSP00000369396
Ensembl peptide - ENSP00000369399
Ensembl peptide - ENSP00000495559
Ensembl peptide - ENSP00000495635
Ensembl peptide - ENSP00000404271
Ensembl peptide - ENSP00000441370
Ensembl peptide - ENSP00000476859
Ensembl peptide - ENSP00000493503
Ensembl peptide - ENSP00000493824
Ensembl peptide - ENSP00000495050
NCBI entrez gene - 83959     See in Manteia.
OMIM - 610206
RefSeq - XM_017028096
RefSeq - NM_001174089
RefSeq - NM_001174090
RefSeq - NM_032034
RefSeq - XM_011529383
RefSeq - XM_011529384
RefSeq - XM_011529385
RefSeq - XM_017028093
RefSeq - XM_017028094
RefSeq - XM_017028095
RefSeq - XM_005260856
RefSeq - XM_005260857
RefSeq Peptide - NP_001167561
RefSeq Peptide - NP_114423
RefSeq Peptide - NP_001167560
swissprot - Q8NBS3
swissprot - V9GXZ2
swissprot - V9GYK6
Ensembl - ENSG00000088836
  
Related genetic diseases (OMIM): 217400 - Corneal endothelial dystrophy and perceptive deafness, 217400
  217700 - Corneal endothelial dystrophy, autosomal recessive, 217700
  613268 - Corneal dystrophy, Fuchs endothelial, 4, 613268
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc4a11ENSDARG00000075532Danio rerio
 SLC4A11ENSGALG00000016017Gallus gallus
 A2AJN7ENSMUSG00000074796Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P04920 / SLC4A2 / solute carrier family 4 member 2ENSG0000016488924
P48751 / SLC4A3 / solute carrier family 4 member 3ENSG0000011492324
Q9Y6R1 / SLC4A4 / solute carrier family 4 member 4ENSG0000008049323
Q9BY07 / SLC4A5 / solute carrier family 4 member 5ENSG0000018868723
Q6U841 / SLC4A10 / solute carrier family 4 member 10ENSG0000014429022
Q2Y0W8 / SLC4A8 / solute carrier family 4 member 8ENSG0000005043822
Q96Q91 / SLC4A9 / solute carrier family 4 member 9ENSG0000011307322
P02730 / SLC4A1 / solute carrier family 4 member 1 (Diego blood group)ENSG0000000493922
Q9Y6M7 / SLC4A7 / solute carrier family 4 member 7ENSG0000003386722


Protein motifs (from Interpro)
Interpro ID Name
 IPR003020  Bicarbonate transporter, eukaryotic
 IPR011531  Bicarbonate transporter, C-terminal
 IPR016152  Phosphotransferase/anion transporter


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006814 sodium ion transport IDA
 biological_processGO:0006820 anion transport IEA
 biological_processGO:0015698 inorganic anion transport IEA
 biological_processGO:0015701 bicarbonate transport IDA
 biological_processGO:0030003 cellular cation homeostasis IDA
 biological_processGO:0035445 borate transmembrane transport IEA
 biological_processGO:0035725 sodium ion transmembrane transport IEA
 biological_processGO:0042044 fluid transport ISS
 biological_processGO:0046713 borate transport IDA
 biological_processGO:0050801 ion homeostasis IEA
 biological_processGO:0051453 regulation of intracellular pH IBA
 biological_processGO:0098656 anion transmembrane transport IEA
 biological_processGO:1902600 proton transmembrane transport IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016323 basolateral plasma membrane TAS
 molecular_functionGO:0005272 sodium channel activity IDA
 molecular_functionGO:0005452 inorganic anion exchanger activity IEA
 molecular_functionGO:0015106 bicarbonate transmembrane transporter activity IDA
 molecular_functionGO:0015252 proton channel activity IDA
 molecular_functionGO:0015293 symporter activity IEA
 molecular_functionGO:0015301 anion:anion antiporter activity IEA
 molecular_functionGO:0046715 active borate transmembrane transporter activity IDA
 molecular_functionGO:0046983 protein dimerization activity IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
Show

 HP:0000505 Impaired vision 
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0001131 Corneal dystrophy 
Show

 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
Show

 HP:0001878 Hemolytic anemia 
Show

 HP:0001923 Reticulocytosis 
Show

 HP:0001939 Metabolism abnormality 
Show

 HP:0004446 Stomatocytosis 
Show

 HP:0007759 Corneal opacities, not impairing visual acuity 
Show

 HP:0007957 Variable degree of corneal opacities 
Show

 HP:0008005 Congenital corneal dystrophy 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr