ENSG00000100105


Homo sapiens

Features
Gene ID: ENSG00000100105
  
Biological name :PATZ1
  
Synonyms : PATZ1 / POZ/BTB and AT hook containing zinc finger 1 / Q9HBE1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: -1
Band: q12.2
Gene start: 31325804
Gene end: 31346232
  
Corresponding Affymetrix probe sets: 209431_s_at (Human Genome U133 Plus 2.0 Array)   209494_s_at (Human Genome U133 Plus 2.0 Array)   210581_x_at (Human Genome U133 Plus 2.0 Array)   211391_s_at (Human Genome U133 Plus 2.0 Array)   211392_s_at (Human Genome U133 Plus 2.0 Array)   211393_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000266269
Ensembl peptide - ENSP00000384173
Ensembl peptide - ENSP00000337520
Ensembl peptide - ENSP00000215919
NCBI entrez gene - 23598     See in Manteia.
OMIM - 605165
RefSeq - NM_014323
RefSeq - NM_032050
RefSeq - NM_032051
RefSeq - NM_032052
RefSeq Peptide - NP_114440
RefSeq Peptide - NP_114441
RefSeq Peptide - NP_055138
RefSeq Peptide - NP_114439
swissprot - A0A024R1F8
swissprot - A0A024R1M5
swissprot - Q9HBE1
swissprot - A0A024R1H7
Ensembl - ENSG00000100105
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 patz1ENSDARG00000076584Danio rerio
 PATZ1ENSGALG00000006934Gallus gallus
 Patz1ENSMUSG00000020453Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MAZ / P56270 / MYC associated zinc finger proteinENSG0000010349523
VEZF1 / Q14119 / vascular endothelial zinc finger 1ENSG0000013645121


Protein motifs (from Interpro)
Interpro ID Name
 IPR000210  BTB/POZ domain
 IPR000637  HMG-I/HMG-Y, DNA-binding, conserved site
 IPR011333  SKP1/BTB/POZ domain superfamily
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR029037  YfgJ-like
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated TAS
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0008584 male gonad development IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0030217 T cell differentiation IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated TAS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding ISM
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding NAS
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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