ENSG00000100288


Homo sapiens

Features
Gene ID: ENSG00000100288
  
Biological name :CHKB
  
Synonyms : CHKB / choline kinase beta / Q9Y259
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: -1
Band: q13.33
Gene start: 50578949
Gene end: 50601455
  
Corresponding Affymetrix probe sets: 204193_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000384400
NCBI entrez gene - 1120     See in Manteia.
OMIM - 612395
RefSeq - NM_005198
RefSeq Peptide - NP_005189
swissprot - A0A024R4X4
swissprot - Q9Y259
Ensembl - ENSG00000100288
  
Related genetic diseases (OMIM): 602541 - Muscular dystrophy, congenital, megaconial type, 602541
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 chkbENSDARG00000063167Danio rerio
 AC137513.1ENSMUSG00000116461Mus musculus
 ChkbENSMUSG00000022617Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CHKA / P35790 / choline kinase alphaENSG0000011072157
ETNK1 / Q9HBU6 / ethanolamine kinase 1ENSG0000013916329
ETNK2 / Q9NVF9 / ethanolamine kinase 2ENSG0000014384523
CHKB-CPT1B / CHKB-CPT1B readthrough (NMD candidate)ENSG0000025441315


Protein motifs (from Interpro)
Interpro ID Name
 IPR011009  Protein kinase-like domain superfamily
 IPR026712  Choline/Ethanolamine kinase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006646 phosphatidylethanolamine biosynthetic process TAS
 biological_processGO:0006656 phosphatidylcholine biosynthetic process TAS
 biological_processGO:0006657 CDP-choline pathway IEA
 biological_processGO:0008654 phospholipid biosynthetic process IEA
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0046474 glycerophospholipid biosynthetic process IEA
 cellular_componentGO:0005829 cytosol TAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004103 choline kinase activity TAS
 molecular_functionGO:0004305 ethanolamine kinase activity TAS
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016301 kinase activity IEA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
Synthesis of PC
Synthesis of PE


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000750 Impaired language development 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001270 Motor retardation 
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0001427 Mitochondrial inheritance "A mode of inheritance that is observed for traits related to a gene encoded on the mitochondrial genome. Because the mitochondrial genome is almost always maternally inherited, a mitochondrial condition can only be transmitted by females, although the condition can affect both sexes. The proportion of mutant mitochondria can vary (heteroplasmy)." [HPO:curators]
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 HP:0001644 Dilated cardiomyopathy 
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 HP:0002465 Poor speech 
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 HP:0002515 Waddling gait 
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 HP:0003198 Myopathy 
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003391 Gower sign "A phenomen whereby patients are not able to stand up without the use of the hands owing to weakness of the proximal muscles of the lower limbs." [HPO:probinson]
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 HP:0003560 Muscular dystrophy "The term dystrophy means abnormal growth. However, muscular dystrophy is used to describe primary myopathies with a genetic basis and a progressive course characterized by progressive skeletal muscle weakness, defects in muscle proteins, and the apoptosis of muscle cells." [HPO:curators]
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 HP:0003577 Onset at birth 
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 HP:0003677 Slow progression 
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 HP:0003741 Congenital muscular dystrophy 
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 HP:0008064 Ichthyosiform abnormality of the skin 
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000110721 CHKA / P35790 / choline kinase alpha  / complex
 ENSG00000100288 CHKB / Q9Y259 / choline kinase beta  / complex






 

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