ENSG00000101311


Homo sapiens

Features
Gene ID: ENSG00000101311
  
Biological name :FERMT1
  
Synonyms : fermitin family member 1 / FERMT1 / Q9BQL6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: -1
Band: p12.3
Gene start: 6074845
Gene end: 6123544
  
Corresponding Affymetrix probe sets: 218796_at (Human Genome U133 Plus 2.0 Array)   229545_at (Human Genome U133 Plus 2.0 Array)   232479_at (Human Genome U133 Plus 2.0 Array)   60474_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000368121
Ensembl peptide - ENSP00000217289
Ensembl peptide - ENSP00000441063
NCBI entrez gene - 55612     See in Manteia.
OMIM - 607900
RefSeq - NM_017671
RefSeq Peptide - NP_060141
swissprot - Q9BQL6
swissprot - G3V1L6
swissprot - Q5JWV4
Ensembl - ENSG00000101311
  
Related genetic diseases (OMIM): 173650 - Kindler syndrome, 173650
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 fermt1ENSDARG00000052652Danio rerio
 FERMT1ENSGALG00000008827Gallus gallus
 Fermt1ENSMUSG00000027356Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
FERMT2 / Q96AC1 / fermitin family member 2ENSG0000007371263
FERMT3 / Q86UX7 / fermitin family member 3ENSG0000014978152


Protein motifs (from Interpro)
Interpro ID Name
 IPR001849  Pleckstrin homology domain
 IPR011993  PH-like domain superfamily
 IPR014352  FERM/acyl-CoA-binding protein superfamily
 IPR019748  FERM central domain
 IPR019749  Band 4.1 domain
 IPR029071  Ubiquitin-like domain superfamily
 IPR035963  FERM superfamily, second domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001954 positive regulation of cell-matrix adhesion IEA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007229 integrin-mediated signaling pathway IEA
 biological_processGO:0010629 negative regulation of gene expression IEA
 biological_processGO:0030511 positive regulation of transforming growth factor beta receptor signaling pathway IEA
 biological_processGO:0033630 positive regulation of cell adhesion mediated by integrin IEA
 biological_processGO:0042308 negative regulation of protein import into nucleus IEA
 biological_processGO:0043616 keratinocyte proliferation IDA
 biological_processGO:0051546 keratinocyte migration IDA
 biological_processGO:0051886 negative regulation of timing of anagen IEA
 biological_processGO:0071711 basement membrane organization IEA
 biological_processGO:0090090 negative regulation of canonical Wnt signaling pathway IEA
 biological_processGO:0090162 establishment of epithelial cell polarity IDA
 biological_processGO:2000647 negative regulation of stem cell proliferation IEA
 biological_processGO:2001203 positive regulation of transforming growth factor-beta secretion IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005925 focal adhesion IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0031941 filamentous actin IEA
 cellular_componentGO:0032587 ruffle membrane IEA
 cellular_componentGO:0042995 cell projection IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000091 Abnormality of the renal tubules 
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000211 Trismus "Limitation in the ability to open the mouth." [HPO:curators]
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 HP:0000217 Xerostomia "Dryness of the mouth due to salivary gland dysfunction." [HPO:curators]
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 HP:0000225 Gingival bleeding 
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 HP:0000230 Gingivitis 
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 HP:0000262 Turricephaly "Turricephaly is derived from the Latin word turris, meaning tall, and refers to a round, tall (tower-like) skull." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000509 Conjunctivitis "Inflammation of the conjunctiva." [HPO:curators]
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 HP:0000656 Ectropion "An abnormal turning outward of the lower eyelid." [HPO:sdoelken]
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 HP:0000670 Carious teeth 
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 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
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 HP:0000704 Periodontal disease 
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 HP:0000772 Abnormality of the ribs 
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 HP:0000795 Abnormality of the urethra "An abnormality of the urethra, i.e., of the tube which connects the urinary bladder to the outside of the body." [HPO:curators]
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 HP:0000963 Thin skin 
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 HP:0000964 Eczema "Eczema is a form of dermatitis. The term eczema is broadly applied to a range of persistent skin conditions and can be related to a number of underlying conditions. Manifestations of eczema can include dryness and recurring skin rashes with redness, skin edema, itching and dryness, crusting, flaking, blistering, cracking, oozing, or bleeding." [HPO:curators]
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 HP:0000972 Palmoplantar hyperkeratosis "`Hyperkeratosis` (HP:0000962) affecting the palm of the hand and the sole of the foot." [HPO:probinson]
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 HP:0000982 Palmoplantar keratoderma 
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 HP:0000987 Scarring 
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001000 Abnormality of skin pigmentation 
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 HP:0001025 Urticaria 
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 HP:0001029 Poikiloderma 
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 HP:0001030 Fragile skin 
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 HP:0001053 Hypopigmented skin patches 
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 HP:0001056 Milia 
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 HP:0001096 Keratoconjunctivitis "Inflammation of the cornea and conjunctiva." [HPO:curators]
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 HP:0001163 Abnormality of the metacarpal bones 
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 HP:0001581 Recurrent skin infections "Infections of the skin that happen multiple times." [HPO:curators]
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 HP:0001602 Laryngeal stenosis 
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 HP:0001741 Phimosis 
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 HP:0001807 Nail ridging 
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 HP:0001810 Dystrophic toenails 
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 HP:0001903 Anemia 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002043 Esophageal stricture 
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 HP:0002583 Severe colitis 
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 HP:0002745 Oral leukoplakia 
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 HP:0002860 Squamous cell carcinoma 
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 HP:0003272 Abnormality of the hip "An abnormality of the hip joint or the surrounding anatomic region." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004334 Dermal atrophy "Partial or complete wasting (atrophy) of the skin." [HPO:curators]
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 HP:0004378 Abnormality of the anus "Abnormality of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0005585 Spotty hyperpigmentation 
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 HP:0005590 Spotty hypopigmentation 
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 HP:0005692 Joint hyperflexibility 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006323 Premature deciduous tooth loss 
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 HP:0006740 Transitional cell carcinoma of the bladder 
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 HP:0007400 Irregular hyperpigmentation 
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 HP:0007488 Diffuse skin atrophy 
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 HP:0007561 Telangiectases in sun-exposed and nonexposed skin 
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 HP:0007759 Corneal opacities, not impairing visual acuity 
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 HP:0007957 Variable degree of corneal opacities 
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 HP:0008064 Ichthyosiform abnormality of the skin 
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 HP:0008065 Aplasia/Hypoplasia of the skin 
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 HP:0008066 Abnormal blistering of the skin 
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 HP:0008388 Abnormality of the toenails 
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 HP:0008391 Mildly dystrophic fingernails 
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 HP:0009775 Amniotic bands "Annular constrictions around the digits, limbs, or trunk, occurring congenitally (sometimes causing intrauterine autoamputation) and also associated with a wide variety of disorders. Constrictive amniotic bands are the result of primary amniotic rupture, which can lead to entanglement of fetal tissue (especially limbs) in fibrous amniotic strangs." [HPO:curators]
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 HP:0010044 Hypoplastic/short 4th metacarpal 
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 HP:0010047 Hypoplastic/short 5th metacarpal 
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 HP:0010296 Ankyloglossia "Short or anteriorly attached lingual frenulum associated with limited mobility of the tongue." [pmid:19125428]
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 HP:0010783 Erythema "Redness of the skin, caused by hyperemia of the capillaries in the lower layers of the skin." [HPO:probinson]
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 HP:0010807 Open bite "Visible space between the dental arches in occlusion." [pmid:19125428]
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 HP:0011024 Abnormality of the gastrointestinal tract "An abnormality of the `gastrointestinal tract` (FMA:71132)." [HPO:probinson]
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 HP:0012227 Urethral stricture "Narrowing of the urethra associated with inflammation or scar tissue." [HPO:probinson]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100517 Neoplasm of the urethra "The presence of a `neoplasm` (MPATH:218) of the `urethra` (FMA:19667)." [HPO:probinson]
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 HP:0100585 Teleangiectasia of the skin 
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 HP:0100587 Abnormality of the preputium 
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 HP:0100633 Esophagitis 
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 HP:0100669 Abnormal pigmentation of oral cavity 
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 HP:0100825 Cheilitis "Inflammation of the lip." [HPO:sdoelken]
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 HP:0200020 Corneal erosions "Erosions or Abbrasions of the cornea s outermost layer of epithelial cells." [HPO:sdoelken]
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 HP:0200034 skin papules "A circumscribed, solid elevation of skin with no visible fluid, varying in size from a pinhead to less than 10mm in diameter at the widest point." [HPO:SKOEHLER]
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 HP:0200039 skin pustule "A small elevation of the skin containing cloudy or purulent material usually consisting of necrotic inflammatory cells." [HPO:SKOEHLER]
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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 HP:0430007 Symblepharon "A partial or complete adhesion of the palpebral conjunctiva of the eyelid to the bulbar conjunctiva of the eyeball." [GOC:MG, http://en.wikipedia.org/wiki/Symblepharon]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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