ENSG00000103168


Homo sapiens

Features
Gene ID: ENSG00000103168
  
Biological name :TAF1C
  
Synonyms : Q15572 / TAF1C / TATA-box binding protein associated factor, RNA polymerase I subunit C
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: -1
Band: q24.1
Gene start: 84177847
Gene end: 84187070
  
Corresponding Affymetrix probe sets: 203937_s_at (Human Genome U133 Plus 2.0 Array)   203938_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000457883
Ensembl peptide - ENSP00000456133
Ensembl peptide - ENSP00000457281
Ensembl peptide - ENSP00000345305
Ensembl peptide - ENSP00000437900
Ensembl peptide - ENSP00000454494
Ensembl peptide - ENSP00000454854
Ensembl peptide - ENSP00000455247
Ensembl peptide - ENSP00000455265
Ensembl peptide - ENSP00000455787
Ensembl peptide - ENSP00000455933
Ensembl peptide - ENSP00000456011
Ensembl peptide - ENSP00000456101
NCBI entrez gene - 9013     See in Manteia.
OMIM - 604905
RefSeq - XM_017023848
RefSeq - NM_001243156
RefSeq - NM_001243157
RefSeq - NM_001243158
RefSeq - NM_001243159
RefSeq - NM_001243160
RefSeq - NM_005679
RefSeq - NM_139353
RefSeq - XM_005256226
RefSeq - XM_005256227
RefSeq - XM_006721325
RefSeq - XM_006721326
RefSeq - XM_017023845
RefSeq - XM_017023846
RefSeq - XM_017023847
RefSeq Peptide - NP_001230087
RefSeq Peptide - NP_001230088
RefSeq Peptide - NP_001230089
RefSeq Peptide - NP_005670
RefSeq Peptide - NP_647610
RefSeq Peptide - NP_001230086
RefSeq Peptide - NP_001230085
swissprot - H3BUZ7
swissprot - Q15572
swissprot - H3BMQ4
swissprot - H3BNH3
swissprot - H3BQH8
swissprot - H3BQZ8
swissprot - H3BR71
swissprot - H3BR91
swissprot - H3BTQ6
Ensembl - ENSG00000103168
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 wu:fj64h06ENSDARG00000096310Danio rerio
 TAF1CENSGALG00000025868Gallus gallus
 Taf1cENSMUSG00000031832Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001188 RNA polymerase I transcriptional preinitiation complex assembly IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006356 regulation of transcription by RNA polymerase I NAS
 biological_processGO:0006360 transcription by RNA polymerase I TAS
 biological_processGO:0006361 transcription initiation from RNA polymerase I promoter TAS
 biological_processGO:0006362 transcription elongation from RNA polymerase I promoter TAS
 biological_processGO:0006363 termination of RNA polymerase I transcription TAS
 biological_processGO:0006366 transcription by RNA polymerase II TAS
 biological_processGO:0045815 positive regulation of gene expression, epigenetic TAS
 cellular_componentGO:0000120 RNA polymerase I transcription factor complex IBA
 cellular_componentGO:0001650 fibrillar center IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IDA
 molecular_functionGO:0001164 RNA polymerase I CORE element sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
SIRT1 negatively regulates rRNA expression
NoRC negatively regulates rRNA expression
B-WICH complex positively regulates rRNA expression
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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