ENSMUSG00000031832


Mus musculus

Features
Gene ID: ENSMUSG00000031832
  
Biological name :Taf1c
  
Synonyms : Q6PDZ2 / Taf1c / TATA box-binding protein-associated factor RNA polymerase I subunit C
  
Possible biological names infered from orthology : Q15572
  
Species: Mus musculus
  
Chr. number: 8
Strand: -1
Band: E1
Gene start: 119597871
Gene end: 119605222
  
Corresponding Affymetrix probe sets: 10582129 (MoGene1.0st)   1423483_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000090789
Ensembl peptide - ENSMUSP00000118480
NCBI entrez gene - 21341     See in Manteia.
MGI - MGI:109576
RefSeq - XM_006530823
RefSeq - NM_021441
RefSeq - XM_006530821
RefSeq - XM_006530822
RefSeq Peptide - NP_067416
swissprot - D6RI25
swissprot - Q6PDZ2
Ensembl - ENSMUSG00000031832
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 wu:fj64h06ENSDARG00000096310Danio rerio
 TAF1CENSGALG00000025868Gallus gallus
 TAF1CENSG00000103168Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001188 RNA polymerase I transcriptional preinitiation complex assembly IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006360 transcription by RNA polymerase I TAS
 cellular_componentGO:0000120 RNA polymerase I transcription factor complex TAS
 cellular_componentGO:0001650 fibrillar center IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0001164 RNA polymerase I CORE element sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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