ENSGALG00000025868


Gallus gallus

Features
Gene ID: ENSGALG00000025868
  
Biological name :TAF1C
  
Synonyms : TAF1C / TATA-box binding protein associated factor, RNA polymerase I subunit C
  
Possible biological names infered from orthology : Q15572 / Q6PDZ2
  
Species: Gallus gallus
  
Chr. number: Z
Strand: 1
Band:
Gene start: 9087791
Gene end: 9092356
  
Corresponding Affymetrix probe sets: GgaAffx.8934.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000042211
NCBI entrez gene - 101750393     See in Manteia.
RefSeq - XM_004937135
RefSeq - XM_004937136
RefSeq - XM_004937137
swissprot - R4GJA0
Ensembl - ENSGALG00000025868
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 wu:fj64h06ENSDARG00000096310Danio rerio
 TAF1CENSG00000103168Homo sapiens
 Taf1cENSMUSG00000031832Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001188 RNA polymerase I transcriptional preinitiation complex assembly IEA
 biological_processGO:0006360 transcription by RNA polymerase I IBA
 cellular_componentGO:0000120 RNA polymerase I transcription factor complex IBA
 cellular_componentGO:0001650 fibrillar center IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0001164 RNA polymerase I CORE element sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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