ENSG00000103449


Homo sapiens

Features
Gene ID: ENSG00000103449
  
Biological name :SALL1
  
Synonyms : Q9NSC2 / SALL1 / spalt like transcription factor 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: -1
Band: q12.1
Gene start: 51135975
Gene end: 51151367
  
Corresponding Affymetrix probe sets: 206893_at (Human Genome U133 Plus 2.0 Array)   229273_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000251020
Ensembl peptide - ENSP00000407914
Ensembl peptide - ENSP00000455582
Ensembl peptide - ENSP00000456777
NCBI entrez gene - 6299     See in Manteia.
OMIM - 602218
RefSeq - XM_011523254
RefSeq - NM_001127892
RefSeq - NM_002968
RefSeq - XM_006721241
RefSeq Peptide - NP_001121364
RefSeq Peptide - NP_002959
swissprot - H3BSM9
swissprot - Q9NSC2
swissprot - H3BQ32
Ensembl - ENSG00000103449
  
Related genetic diseases (OMIM): 107480 - Townes-Brocks branchiootorenal-like syndrome, 107480

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sall1aENSDARG00000074319Danio rerio
 SALL1ENSGALG00000039238Gallus gallus
 Sall1ENSMUSG00000031665Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SALL3 / Q9BXA9 / spalt like transcription factor 3ENSG0000025646352
SALL4 / Q9UJQ4 / spalt like transcription factor 4ENSG0000010111534
SALL2 / Q9Y467 / spalt like transcription factor 2ENSG0000016582124


Protein motifs (from Interpro)
Interpro ID Name
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0001657 ureteric bud development ISS
 biological_processGO:0001658 branching involved in ureteric bud morphogenesis ISS
 biological_processGO:0001822 kidney development IMP
 biological_processGO:0003281 ventricular septum development ISS
 biological_processGO:0003337 mesenchymal to epithelial transition involved in metanephros morphogenesis IEP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007507 heart development IMP
 biological_processGO:0008406 gonad development IEP
 biological_processGO:0016575 histone deacetylation IEA
 biological_processGO:0021553 olfactory nerve development ISS
 biological_processGO:0021889 olfactory bulb interneuron differentiation ISS
 biological_processGO:0021983 pituitary gland development IEP
 biological_processGO:0022008 neurogenesis IBA
 biological_processGO:0030177 positive regulation of Wnt signaling pathway IDA
 biological_processGO:0030325 adrenal gland development IEP
 biological_processGO:0031129 inductive cell-cell signaling ISS
 biological_processGO:0035019 somatic stem cell population maintenance TAS
 biological_processGO:0042473 outer ear morphogenesis IMP
 biological_processGO:0042733 embryonic digit morphogenesis IMP
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0048566 embryonic digestive tract development IMP
 biological_processGO:0060173 limb development IMP
 biological_processGO:0061034 olfactory bulb mitral cell layer development IMP
 biological_processGO:0072073 kidney epithelium development ISS
 biological_processGO:0072092 ureteric bud invasion ISS
 cellular_componentGO:0000792 heterochromatin IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0010369 chromocenter IDA
 cellular_componentGO:0016581 NuRD complex ISS
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding NAS
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0004407 histone deacetylase activity ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008013 beta-catenin binding IDA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
POU5F1 (OCT4), SOX2, NANOG activate genes related to proliferation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
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 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000048 Bifid scrotum "Separation of the two halves of the scrotum, whereby commonly the 2 halves of the scrotum meet above the penis." [HPO:curators]
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000086 Ectopic kidney "A developmental defect in which a kidney is located in an abnormal anatomic position." [HPO:curators]
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 HP:0000089 Renal hypoplasia 
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 HP:0000110 Renal dysplasia 
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 HP:0000130 Abnormality of the uterus "An abnormality of the uterus (womb)." [HPO:curators]
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 HP:0000136 Bifid uterus "A uterus that is divided into two lateral horns as a result of imperfect fusion of the paramesonephric ducts." [HPO:curators]
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 HP:0000143 Rectovaginal fistula "The presence of a fistula between the rectum and the vagina." [HPO:curators]
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 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000324 Facial asymmetry 
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 HP:0000365 Hearing loss 
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 HP:0000384 Preauricular skin tag "A rudimentary tag of ear tissue often containing a core of cartilage and located just in front of the auricle (outer part of the ear)." [HPO:curators]
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 HP:0000396 Overfolded helices "A condition in which the upper edge of the ear is folded over to a greater degree than normal." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000504 Abnormality of vision "Abnormality of eyesight (visual perception)." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000567 Chorioretinal coloboma 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
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 HP:0000772 Abnormality of the ribs 
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 HP:0000821 Hypothyroidism 
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 HP:0000823 Delayed puberty 
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 HP:0001140 Epibulbar dermoids "An epibulbar dermoid is a benign tumor typically found at the junction of the cornea and sclera (limbal epibullar dermoid)." [HPO:curators]
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 HP:0001177 Preaxial polydactyly (hands) "Supernumerary digits located at the radial side of the hand. Polydactyly (supernumerary digits) involving the thumb occurs in many distinct forms of high variability and severity. Ranging from fleshy nubbins over varying degrees of partial duplication/splitting to completely duplicated or even triplicated thumbs or preaxial (on the radial side of the hand) supernumerary digits." [HPO:curators]
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 HP:0001199 Triphalangeal thumb "In contrast to the metacarpals 2-5, the first metacarpal is embryologically of phalangeal origin. The thumb normally consists of the first metacarpal and a proximal and distal phalanx. All other digits have an additional middle phalanx. This term applies if the thumb has an accessory phalanx, leading to a digit like appearance of the thumb." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001440 Synostosis involving metatarsal bones 
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 HP:0001482 Subcutaneous nodules 
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 HP:0001508 Failure to thrive 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001545 Anteriorly placed anus "Anterior malposition of the anus." [HPO:curators]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0001641 Abnormality of the pulmonary valve "An abnormality of the `pulmonary valve` (FMA:7246)." [HPO:probinson]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0001770 Toe syndactyly "Webbing or fusion of the toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001863 Clinodactyly (feet) 
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 HP:0001864 Fifth toe clinodactyly 
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 HP:0002019 Constipation 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0002025 Anal stenosis "Abnormal narrowing of the anal opening." [HPO:curators]
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 HP:0002247 Duodenal atresia "A developmental defect resulting in complete obliteration of the duodenal lumen, that is, an abnormal closure of the duodenum." [HPO:curator]
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 HP:0002308 Arnold-Chiari malformation "Arnold-Chiari malformation consists of a downward displacement of the cerebellar tonsils and the medulla through the foramen magnum, sometimes causing hydrocephalus as a result of obstruction of CSF outflow." [HPO:curators]
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 HP:0002607 Bowel incontinence 
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 HP:0003468 Abnormalities of the vertebrae 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004453 Overfolding of the superior helices 
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 HP:0004467 Preauricular sinus "The preauricular sinus is a benign congenital lesion of the preauricular soft tissue consisting of a blind-ending narrow tube or pit. It is also known as preauricular pit, preauricular fistula, preauricular tract and preauricular cyst. It can be asymptomatic or present as an infected and discharging sinus. It presents as a small pit adjacent to the external ear usually located at the anterior margin of the ascending limb of the helix." [HPO:curators]
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 HP:0004691 2-3 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes two and three." [HPO:sdoelken]
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 HP:0004792 rectoperineal fistula 
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 HP:0005562 Multiple renal cysts 
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 HP:0006097 3-4 finger syndactyly "`Syndactyly` (HP:0001159) with fusion of fingers three and four." [HPO:sdoelken]
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 HP:0006179 Pseudoepiphyses of second metacarpal 
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 HP:0006824 Cranial nerve paralysis 
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 HP:0008551 Underdeveloped ears 
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 HP:0008572 External ear malformation 
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 HP:0008736 Hypoplasia of penis 
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 HP:0009465 Ulnar deviation of fingers 
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 HP:0009779 3-4 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes three and four." [HPO:sdoelken]
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 HP:0009912 Abnormality of the tragus "Abnormality of the tragus, which is the small pointed eminence of the external ear, situated in front of the concha, and projecting backward over the auditory canal." [HPO:curators]
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 HP:0009921 Duane anomaly "Duane anomaly is a congenital eye movement impairment with limitation of the ability to adduct or abduct the eye. When affected eyes are adducted (moved inwards towards the nose), the eyeball retracts and the palpebral fissure narrows." [HPO:curators]
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 HP:0009944 Partial duplication of the phalanges of the thumb "A partial duplication, depending on severity leading to a broad or bifid appearance, affecting one or more of the phalanges of the thumb. As opposed to a complete duplication there is still a variable degree of fusion between the duplicated bones." [HPO:curators]
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 HP:0010059 Broad phalanges of the hallux 
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 HP:0010331 Aplasia/Hypoplasia of the 3rd toe 
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 HP:0010481 Urethral valve "The presence of an abnormal membrane obstructing the urethera." [HPO:curators]
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 HP:0010709 2-4 finger syndactyly "`Syndactyly` (HP:0001159) with fusion of the fingers two to four." [HPO:sdoelken]
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 HP:0010743 Hypoplasia of the metatarsal bones 
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 HP:0011304 Broad thumb "Increased thumb width without increased dorso-ventral dimension." [pmid:19125433]
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 HP:0030676 Satyr ear "Sharp pointed superior portion of the ear, with variable overfolding of the helix." [PMID:19152421]
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 HP:0100015 Stahl ear "The presence of a `supernumerary` (PATO:0002002), i.e. third, `crus of the helix (FMA:61024) in the `helix` (FMA:60992), arising at or above the normal bifurcation of the antihelix." [HPO:sdoelken]
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 HP:0100559 Lower limb asymmetry 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
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